Variation in responses to N limitation in Solanum lycopersicum var. cerasiforme and S. pimpinellifolium accessions and hybrids reveals genetic potential for improving nitrogen use efficiency (NUE) in tomato breeding

[EN] Enhancing nitrogen use efficiency (NUE) is critical in reducing the environmental footprint of agriculture. Wild relatives represent valuable underexploited genetic resources for improving NUE and ensuring sustainable tomato (Solanum lycopersicum L.) production in response to global demand. Thi...

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Autores: Gil Vilar, D., Arbona, Vicent, Medina, Joaquín, Nebauer, Sergio G., Arrones-Olmo, Andrea|||0000-0003-3926-0291, Gramazio, Pietro|||0000-0003-2226-7999, Vilanova Navarro, Santiago|||0000-0003-4939-9713, Jiménez-Benavente, Eva, Plazas Ávila, María de la O|||0000-0001-8090-7312, GRANELL RICHART, ANTONIO|||0000-0003-4266-9581, Molina Romero, Rosa Victoria|||0000-0001-9922-1185, Prohens Tomás, Jaime|||0000-0003-1181-9065
Tipo de documento: artigo
Data de publicação:2025
País:España
Recursos:Universitat Politècnica de València (UPV)
Repositório:RiuNet. Repositorio Institucional de la Universitat Politécnica de Valéncia
Idioma:inglês
OAI Identifier:oai:riunet.upv.es:10251/226690
Acesso em linha:https://riunet.upv.es/handle/10251/226690
Access Level:Acceso aberto
Palavra-chave:Tomato
Breeding
NUE
Partition
Uptake
Nitrogen
Yield
Low-input agriculture
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network_acronym_str ES
network_name_str España
repository_id_str
dc.title.none.fl_str_mv Variation in responses to N limitation in Solanum lycopersicum var. cerasiforme and S. pimpinellifolium accessions and hybrids reveals genetic potential for improving nitrogen use efficiency (NUE) in tomato breeding
title Variation in responses to N limitation in Solanum lycopersicum var. cerasiforme and S. pimpinellifolium accessions and hybrids reveals genetic potential for improving nitrogen use efficiency (NUE) in tomato breeding
spellingShingle Variation in responses to N limitation in Solanum lycopersicum var. cerasiforme and S. pimpinellifolium accessions and hybrids reveals genetic potential for improving nitrogen use efficiency (NUE) in tomato breeding
Gil Vilar, D.
Tomato
Breeding
NUE
Partition
Uptake
Nitrogen
Yield
Low-input agriculture
title_short Variation in responses to N limitation in Solanum lycopersicum var. cerasiforme and S. pimpinellifolium accessions and hybrids reveals genetic potential for improving nitrogen use efficiency (NUE) in tomato breeding
title_full Variation in responses to N limitation in Solanum lycopersicum var. cerasiforme and S. pimpinellifolium accessions and hybrids reveals genetic potential for improving nitrogen use efficiency (NUE) in tomato breeding
title_fullStr Variation in responses to N limitation in Solanum lycopersicum var. cerasiforme and S. pimpinellifolium accessions and hybrids reveals genetic potential for improving nitrogen use efficiency (NUE) in tomato breeding
title_full_unstemmed Variation in responses to N limitation in Solanum lycopersicum var. cerasiforme and S. pimpinellifolium accessions and hybrids reveals genetic potential for improving nitrogen use efficiency (NUE) in tomato breeding
title_sort Variation in responses to N limitation in Solanum lycopersicum var. cerasiforme and S. pimpinellifolium accessions and hybrids reveals genetic potential for improving nitrogen use efficiency (NUE) in tomato breeding
dc.creator.none.fl_str_mv Gil Vilar, D.
Arbona, Vicent
Medina, Joaquín
Nebauer, Sergio G.
Arrones-Olmo, Andrea|||0000-0003-3926-0291
Gramazio, Pietro|||0000-0003-2226-7999
Vilanova Navarro, Santiago|||0000-0003-4939-9713
Jiménez-Benavente, Eva
Plazas Ávila, María de la O|||0000-0001-8090-7312
GRANELL RICHART, ANTONIO|||0000-0003-4266-9581
Molina Romero, Rosa Victoria|||0000-0001-9922-1185
Prohens Tomás, Jaime|||0000-0003-1181-9065
author Gil Vilar, D.
author_facet Gil Vilar, D.
Arbona, Vicent
Medina, Joaquín
Nebauer, Sergio G.
Arrones-Olmo, Andrea|||0000-0003-3926-0291
Gramazio, Pietro|||0000-0003-2226-7999
Vilanova Navarro, Santiago|||0000-0003-4939-9713
Jiménez-Benavente, Eva
Plazas Ávila, María de la O|||0000-0001-8090-7312
GRANELL RICHART, ANTONIO|||0000-0003-4266-9581
Molina Romero, Rosa Victoria|||0000-0001-9922-1185
Prohens Tomás, Jaime|||0000-0003-1181-9065
author_role author
author2 Arbona, Vicent
Medina, Joaquín
Nebauer, Sergio G.
Arrones-Olmo, Andrea|||0000-0003-3926-0291
Gramazio, Pietro|||0000-0003-2226-7999
Vilanova Navarro, Santiago|||0000-0003-4939-9713
Jiménez-Benavente, Eva
Plazas Ávila, María de la O|||0000-0001-8090-7312
GRANELL RICHART, ANTONIO|||0000-0003-4266-9581
Molina Romero, Rosa Victoria|||0000-0001-9922-1185
Prohens Tomás, Jaime|||0000-0003-1181-9065
author2_role author
author
author
author
author
author
author
author
author
author
author
dc.contributor.none.fl_str_mv Departamento de Producción Vegetal
Instituto Universitario Mixto de Biología Molecular y Celular de Plantas
Departamento de Biotecnología
Instituto Universitario de Conservación y Mejora de la Agrodiversidad Valenciana
Escuela Técnica Superior de Ingeniería Agronómica y del Medio Natural
European Commission
Generalitat Valenciana
Agencia Estatal de Investigación
Universitat Politècnica de València
Repositorio Institucional de la Universitat Politècnica de València Riunet
dc.subject.none.fl_str_mv Tomato
Breeding
NUE
Partition
Uptake
Nitrogen
Yield
Low-input agriculture
topic Tomato
Breeding
NUE
Partition
Uptake
Nitrogen
Yield
Low-input agriculture
description [EN] Enhancing nitrogen use efficiency (NUE) is critical in reducing the environmental footprint of agriculture. Wild relatives represent valuable underexploited genetic resources for improving NUE and ensuring sustainable tomato (Solanum lycopersicum L.) production in response to global demand. This study presents an integrative physiological and transcriptomic analysis of four genetically and geographically diverse accessions of S. lycopersicum var. cerasiforme (SLC) and S. pimpinellifolium (SP), along with four interspecific F1 hybrids grown under optimal and sub-optimal N supply levels. These materials were evaluated for their long-term responses, and specific adaptations to N limitation were identified across materials. Specifically, SLC3 displayed high NUE under sub-optimal N supply, primarily due to efficient N partitioning to the fruit, and transcriptional activation of genes associated with photosynthesis and responses to light. Furthermore, SP1 and SP3 accessions presented the highest N uptake efficiency across both N levels, likely linked to differential regulation of genes related to amino acid transport in SP1 and root cell wall growth responses in SP3. Transcriptomic analyses revealed distinct sets of root- and leaf-expressed genes among accessions regulated in response to N availability. Specific combinations of genes involved in N transport, like NPF, NRT2, and amino acid permease families, and C/N metabolism were identified. These results emphasize the potential of SLC and SP accessions as sources of NUE-related alleles, highlighting that their successful incorporation as founders in multiparent MAGIC populations could accelerate breeding for high-yielding, N-efficient tomato cultivars.
publishDate 2025
dc.date.none.fl_str_mv 2025
2025-12-01
dc.type.none.fl_str_mv journal article
http://purl.org/coar/resource_type/c_6501
VoR
http://purl.org/coar/version/c_970fb48d4fbd8a85
dc.type.openaire.fl_str_mv info:eu-repo/semantics/article
format article
dc.identifier.none.fl_str_mv https://riunet.upv.es/handle/10251/226690
url https://riunet.upv.es/handle/10251/226690
dc.language.none.fl_str_mv Inglés
eng
language_invalid_str_mv Inglés
language eng
dc.relation.none.fl_str_mv Agencia Estatal de Investigación http://dx.doi.org/10.13039/501100011033 Plan Estatal de Investigación Científica y Técnica y de Innovación 2017-2020 PID2020-118627RB-I00 IDENTIFICACION DE GENES ASOCIADOS A ESTRESES BIOTICOS Y ABIOTICOS MEDIANTE EL USO DE UNA POBLACION MAGIC (SOLANUM PIMPINELLIFOLIUM Y SOLANUM LYCOPERSICUM VAR CERASIFORME)
Agencia Estatal de Investigación http://dx.doi.org/10.13039/501100011033 Plan Estatal de Investigación Científica y Técnica y de Innovación 2021-2023 PID2022-136541OB-I00 PRODUCCION DE TOMATE EN CONDICIONES DE BAJOS INSUMOS: IDENTIFICACION DE PERMEASAS DE AMINOACIDOS IMPLICADAS EN LA PARTICION DE NITROGENO AL FRUTO COMO DIANAS DE MEJORA
European Commission https://doi.org/10.13039/501100000780 H2020 101000716 Harnessing the value of tomato genetic resources for now and the future
Generalitat Valenciana https://doi.org/10.13039/501100003359 CIPROM%2F2021%2F020
Generalitat Valenciana https://doi.org/10.13039/501100003359 CIAICO%2F2023%2F167
Agencia Estatal de Investigación http://dx.doi.org/10.13039/501100011033 RYC2021-031999-I
Agencia Estatal de Investigación http://dx.doi.org/10.13039/501100011033 TED2021-129296B-I00
dc.rights.none.fl_str_mv open access
http://purl.org/coar/access_right/c_abf2
Reconocimiento - No comercial (by-nc)
http://creativecommons.org/licenses/by-nc/4.0/
dc.rights.openaire.fl_str_mv info:eu-repo/semantics/openAccess
rights_invalid_str_mv open access
http://purl.org/coar/access_right/c_abf2
Reconocimiento - No comercial (by-nc)
http://creativecommons.org/licenses/by-nc/4.0/
eu_rights_str_mv openAccess
dc.format.none.fl_str_mv application/pdf
dc.publisher.none.fl_str_mv Elsevier
publisher.none.fl_str_mv Elsevier
dc.source.none.fl_str_mv reponame:RiuNet. Repositorio Institucional de la Universitat Politécnica de Valéncia
instname:Universitat Politècnica de València (UPV)
instname_str Universitat Politècnica de València (UPV)
reponame_str RiuNet. Repositorio Institucional de la Universitat Politécnica de Valéncia
collection RiuNet. Repositorio Institucional de la Universitat Politécnica de Valéncia
repository.name.fl_str_mv
repository.mail.fl_str_mv
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spelling Variation in responses to N limitation in Solanum lycopersicum var. cerasiforme and S. pimpinellifolium accessions and hybrids reveals genetic potential for improving nitrogen use efficiency (NUE) in tomato breedingGil Vilar, D.Arbona, VicentMedina, JoaquínNebauer, Sergio G.Arrones-Olmo, Andrea|||0000-0003-3926-0291Gramazio, Pietro|||0000-0003-2226-7999Vilanova Navarro, Santiago|||0000-0003-4939-9713Jiménez-Benavente, EvaPlazas Ávila, María de la O|||0000-0001-8090-7312GRANELL RICHART, ANTONIO|||0000-0003-4266-9581Molina Romero, Rosa Victoria|||0000-0001-9922-1185Prohens Tomás, Jaime|||0000-0003-1181-9065TomatoBreedingNUEPartitionUptakeNitrogenYieldLow-input agriculture[EN] Enhancing nitrogen use efficiency (NUE) is critical in reducing the environmental footprint of agriculture. Wild relatives represent valuable underexploited genetic resources for improving NUE and ensuring sustainable tomato (Solanum lycopersicum L.) production in response to global demand. This study presents an integrative physiological and transcriptomic analysis of four genetically and geographically diverse accessions of S. lycopersicum var. cerasiforme (SLC) and S. pimpinellifolium (SP), along with four interspecific F1 hybrids grown under optimal and sub-optimal N supply levels. These materials were evaluated for their long-term responses, and specific adaptations to N limitation were identified across materials. Specifically, SLC3 displayed high NUE under sub-optimal N supply, primarily due to efficient N partitioning to the fruit, and transcriptional activation of genes associated with photosynthesis and responses to light. Furthermore, SP1 and SP3 accessions presented the highest N uptake efficiency across both N levels, likely linked to differential regulation of genes related to amino acid transport in SP1 and root cell wall growth responses in SP3. Transcriptomic analyses revealed distinct sets of root- and leaf-expressed genes among accessions regulated in response to N availability. Specific combinations of genes involved in N transport, like NPF, NRT2, and amino acid permease families, and C/N metabolism were identified. These results emphasize the potential of SLC and SP accessions as sources of NUE-related alleles, highlighting that their successful incorporation as founders in multiparent MAGIC populations could accelerate breeding for high-yielding, N-efficient tomato cultivars.This work has been funded by MICIU/AEI/10.13039/501100011033, by the European union NextGenerationEU/PRTR (TED2021-129296B-I00) , MICIU/AEI/10.13039/501100011033 (PID2020-118627RB-I00) , MICIU/AEI/10.13039/501100011033 and ERDF/EU (PID2022-13654IOB-I00) , Conselleria d'Educacio, Cultura, Universitats i Ocupacio from Generalitat Valenciana (CIPROM/2021/020 and CIAICO/2023/167) , and European Union's Horizon 2020 research and innovation program under grant agreement No 101000716 (HARNESSTOM project) . Pietro Gramazio is grateful for the postdoctoral grant RYC2021-031999-I funded by MICIU/AEI/10.13039/501100011033 and the European Union through NextGenerationEU/PRTR.ElsevierDepartamento de Producción VegetalInstituto Universitario Mixto de Biología Molecular y Celular de PlantasDepartamento de BiotecnologíaInstituto Universitario de Conservación y Mejora de la Agrodiversidad ValencianaEscuela Técnica Superior de Ingeniería Agronómica y del Medio NaturalEuropean CommissionGeneralitat ValencianaAgencia Estatal de InvestigaciónUniversitat Politècnica de ValènciaRepositorio Institucional de la Universitat Politècnica de València Riunet20252025-12-01journal articlehttp://purl.org/coar/resource_type/c_6501VoRhttp://purl.org/coar/version/c_970fb48d4fbd8a85info:eu-repo/semantics/articleapplication/pdfhttps://riunet.upv.es/handle/10251/226690reponame:RiuNet. Repositorio Institucional de la Universitat Politécnica de Valénciainstname:Universitat Politècnica de València (UPV)InglésengAgencia Estatal de Investigación http://dx.doi.org/10.13039/501100011033 Plan Estatal de Investigación Científica y Técnica y de Innovación 2017-2020 PID2020-118627RB-I00 IDENTIFICACION DE GENES ASOCIADOS A ESTRESES BIOTICOS Y ABIOTICOS MEDIANTE EL USO DE UNA POBLACION MAGIC (SOLANUM PIMPINELLIFOLIUM Y SOLANUM LYCOPERSICUM VAR CERASIFORME)Agencia Estatal de Investigación http://dx.doi.org/10.13039/501100011033 Plan Estatal de Investigación Científica y Técnica y de Innovación 2021-2023 PID2022-136541OB-I00 PRODUCCION DE TOMATE EN CONDICIONES DE BAJOS INSUMOS: IDENTIFICACION DE PERMEASAS DE AMINOACIDOS IMPLICADAS EN LA PARTICION DE NITROGENO AL FRUTO COMO DIANAS DE MEJORAEuropean Commission https://doi.org/10.13039/501100000780 H2020 101000716 Harnessing the value of tomato genetic resources for now and the futureGeneralitat Valenciana https://doi.org/10.13039/501100003359 CIPROM%2F2021%2F020Generalitat Valenciana https://doi.org/10.13039/501100003359 CIAICO%2F2023%2F167Agencia Estatal de Investigación http://dx.doi.org/10.13039/501100011033 RYC2021-031999-IAgencia Estatal de Investigación http://dx.doi.org/10.13039/501100011033 TED2021-129296B-I00open accesshttp://purl.org/coar/access_right/c_abf2Reconocimiento - No comercial (by-nc) http://creativecommons.org/licenses/by-nc/4.0/info:eu-repo/semantics/openAccessoai:riunet.upv.es:10251/2266902026-06-13T07:49:27Z
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