Phylogenomic analyses of bradyrhizobium reveal uneven distribution of the lateral and subpolar flagellar systems, which extends to rhizobiales

Licensee MDPI, Basel, Switzerland. Dual flagellar systems have been described in several bacterial genera, but the extent of their prevalence has not been fully explored. Bradyrhizobium diazoefficiens USDA 110T possesses two flagellar systems, the subpolar and the lateral flagella. The lateral flage...

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Authors: Garrido-Sanz, Daniel, Redondo Nieto, Miguel, Mongiardini, Elías, Blanco Romero, Esther, Durán Wendt, David Ricardo, Quelas, Juan I., Martín Basanta, Marta, Rivilla Palma, Rafael, Lodeiro, Aníbal R., Althabegoiti, M. Julia
Format: article
Publication Date:2019
Country:España
Institution:Universidad Autónoma de Madrid
Repository:Biblos-e Archivo. Repositorio Institucional de la UAM
Language:English
OAI Identifier:oai:repositorio.uam.es:10486/690774
Online Access:http://hdl.handle.net/10486/690774
https://dx.doi.org/10.3390/microorganisms7020050
Access Level:Open access
Keyword:Bradyrhizobium
Flagellar systems
Phylogenetic
Phylogenomic
Rhizobiales
Biología y Biomedicina / Biología
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spelling Phylogenomic analyses of bradyrhizobium reveal uneven distribution of the lateral and subpolar flagellar systems, which extends to rhizobialesGarrido-Sanz, DanielRedondo Nieto, MiguelMongiardini, ElíasBlanco Romero, EstherDurán Wendt, David RicardoQuelas, Juan I.Martín Basanta, MartaRivilla Palma, RafaelLodeiro, Aníbal R.Althabegoiti, M. JuliaBradyrhizobiumFlagellar systemsPhylogeneticPhylogenomicRhizobialesBiología y Biomedicina / BiologíaLicensee MDPI, Basel, Switzerland. Dual flagellar systems have been described in several bacterial genera, but the extent of their prevalence has not been fully explored. Bradyrhizobium diazoefficiens USDA 110T possesses two flagellar systems, the subpolar and the lateral flagella. The lateral flagellum of Bradyrhizobium displays no obvious role, since its performance is explained by cooperation with the subpolar flagellum. In contrast, the lateral flagellum is the only type of flagella present in the related Rhizobiaceae family. In this work, we have analyzed the phylogeny of the Bradyrhizobium genus by means of Genome-to-Genome Blast Distance Phylogeny (GBDP) and Average Nucleotide Identity (ANI) comparisons of 128 genomes and divided it into 13 phylogenomic groups. While all the Bradyrhizobium genomes encode the subpolar flagellum, none of them encodes only the lateral flagellum. The simultaneous presence of both flagella is exclusive of the B. japonicum phylogenomic group. Additionally, 292 Rhizobiales order genomes were analyzed and both flagellar systems are present together in only nine genera. Phylogenetic analysis of 150 representative Rhizobiales genomes revealed an uneven distribution of these flagellar systems. While genomes within and close to the Rhizobiaceae family only possess the lateral flagellum, the subpolar flagellum is exclusive of more early-diverging families, where certain genera also present both flagellaThis research was funded by Proyecto de cooperación interuniversitaria UAM-Santander con América Latina 2017-2018, MINECO/FEDER EU, grant number BIO2015-64480R and ANPCyT, Secyt-UNLP CONICET (Argentina). D.G.-S. was funded by MECD FPU fellowship program, grant number FPU14/03965. E.B.-R. was funded by MECD FPU fellowship program, grant number FPU16/05513MDPIDepartamento de BiologíaFacultad de Ciencias20192019-02-01research articlehttp://purl.org/coar/resource_type/c_2df8fbb1VoRhttp://purl.org/coar/version/c_970fb48d4fbd8a85info:eu-repo/semantics/articleapplication/pdfhttp://hdl.handle.net/10486/690774https://dx.doi.org/10.3390/microorganisms7020050reponame:Biblos-e Archivo. Repositorio Institucional de la UAMinstname:Universidad Autónoma de MadridInglésengopen accesshttp://purl.org/coar/access_right/c_abf2info:eu-repo/semantics/openAccessoai:repositorio.uam.es:10486/6907742026-06-23T12:46:27Z
dc.title.none.fl_str_mv Phylogenomic analyses of bradyrhizobium reveal uneven distribution of the lateral and subpolar flagellar systems, which extends to rhizobiales
title Phylogenomic analyses of bradyrhizobium reveal uneven distribution of the lateral and subpolar flagellar systems, which extends to rhizobiales
spellingShingle Phylogenomic analyses of bradyrhizobium reveal uneven distribution of the lateral and subpolar flagellar systems, which extends to rhizobiales
Garrido-Sanz, Daniel
Bradyrhizobium
Flagellar systems
Phylogenetic
Phylogenomic
Rhizobiales
Biología y Biomedicina / Biología
title_short Phylogenomic analyses of bradyrhizobium reveal uneven distribution of the lateral and subpolar flagellar systems, which extends to rhizobiales
title_full Phylogenomic analyses of bradyrhizobium reveal uneven distribution of the lateral and subpolar flagellar systems, which extends to rhizobiales
title_fullStr Phylogenomic analyses of bradyrhizobium reveal uneven distribution of the lateral and subpolar flagellar systems, which extends to rhizobiales
title_full_unstemmed Phylogenomic analyses of bradyrhizobium reveal uneven distribution of the lateral and subpolar flagellar systems, which extends to rhizobiales
title_sort Phylogenomic analyses of bradyrhizobium reveal uneven distribution of the lateral and subpolar flagellar systems, which extends to rhizobiales
dc.creator.none.fl_str_mv Garrido-Sanz, Daniel
Redondo Nieto, Miguel
Mongiardini, Elías
Blanco Romero, Esther
Durán Wendt, David Ricardo
Quelas, Juan I.
Martín Basanta, Marta
Rivilla Palma, Rafael
Lodeiro, Aníbal R.
Althabegoiti, M. Julia
author Garrido-Sanz, Daniel
author_facet Garrido-Sanz, Daniel
Redondo Nieto, Miguel
Mongiardini, Elías
Blanco Romero, Esther
Durán Wendt, David Ricardo
Quelas, Juan I.
Martín Basanta, Marta
Rivilla Palma, Rafael
Lodeiro, Aníbal R.
Althabegoiti, M. Julia
author_role author
author2 Redondo Nieto, Miguel
Mongiardini, Elías
Blanco Romero, Esther
Durán Wendt, David Ricardo
Quelas, Juan I.
Martín Basanta, Marta
Rivilla Palma, Rafael
Lodeiro, Aníbal R.
Althabegoiti, M. Julia
author2_role author
author
author
author
author
author
author
author
author
dc.contributor.none.fl_str_mv Departamento de Biología
Facultad de Ciencias
dc.subject.none.fl_str_mv Bradyrhizobium
Flagellar systems
Phylogenetic
Phylogenomic
Rhizobiales
Biología y Biomedicina / Biología
topic Bradyrhizobium
Flagellar systems
Phylogenetic
Phylogenomic
Rhizobiales
Biología y Biomedicina / Biología
description Licensee MDPI, Basel, Switzerland. Dual flagellar systems have been described in several bacterial genera, but the extent of their prevalence has not been fully explored. Bradyrhizobium diazoefficiens USDA 110T possesses two flagellar systems, the subpolar and the lateral flagella. The lateral flagellum of Bradyrhizobium displays no obvious role, since its performance is explained by cooperation with the subpolar flagellum. In contrast, the lateral flagellum is the only type of flagella present in the related Rhizobiaceae family. In this work, we have analyzed the phylogeny of the Bradyrhizobium genus by means of Genome-to-Genome Blast Distance Phylogeny (GBDP) and Average Nucleotide Identity (ANI) comparisons of 128 genomes and divided it into 13 phylogenomic groups. While all the Bradyrhizobium genomes encode the subpolar flagellum, none of them encodes only the lateral flagellum. The simultaneous presence of both flagella is exclusive of the B. japonicum phylogenomic group. Additionally, 292 Rhizobiales order genomes were analyzed and both flagellar systems are present together in only nine genera. Phylogenetic analysis of 150 representative Rhizobiales genomes revealed an uneven distribution of these flagellar systems. While genomes within and close to the Rhizobiaceae family only possess the lateral flagellum, the subpolar flagellum is exclusive of more early-diverging families, where certain genera also present both flagella
publishDate 2019
dc.date.none.fl_str_mv 2019
2019-02-01
dc.type.none.fl_str_mv research article
http://purl.org/coar/resource_type/c_2df8fbb1
VoR
http://purl.org/coar/version/c_970fb48d4fbd8a85
dc.type.openaire.fl_str_mv info:eu-repo/semantics/article
format article
dc.identifier.none.fl_str_mv http://hdl.handle.net/10486/690774
https://dx.doi.org/10.3390/microorganisms7020050
url http://hdl.handle.net/10486/690774
https://dx.doi.org/10.3390/microorganisms7020050
dc.language.none.fl_str_mv Inglés
eng
language_invalid_str_mv Inglés
language eng
dc.rights.none.fl_str_mv open access
http://purl.org/coar/access_right/c_abf2
dc.rights.openaire.fl_str_mv info:eu-repo/semantics/openAccess
rights_invalid_str_mv open access
http://purl.org/coar/access_right/c_abf2
eu_rights_str_mv openAccess
dc.format.none.fl_str_mv application/pdf
dc.publisher.none.fl_str_mv MDPI
publisher.none.fl_str_mv MDPI
dc.source.none.fl_str_mv reponame:Biblos-e Archivo. Repositorio Institucional de la UAM
instname:Universidad Autónoma de Madrid
instname_str Universidad Autónoma de Madrid
reponame_str Biblos-e Archivo. Repositorio Institucional de la UAM
collection Biblos-e Archivo. Repositorio Institucional de la UAM
repository.name.fl_str_mv
repository.mail.fl_str_mv
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