Advances and challenges in understanding evolution through genome comparison: meeting report of the European Molecular Biology Organization (EMBO) lecture course "Evolutionary and Comparative Genomics"

Gavriilidou, Athina; Stamatakis, Alexandros; Kupczok, Anne; Bista, Iliana; Jiggins, Chris D; Fernández García, Rosa María; Skourtanioti, Eirini; Amoutzias, Grigoris; Delneri, Daniela; Kyrpides, Nikos; Nikolaou, Christoforos; Pittis, Alexandros A; Manousaki, Tereza; Vakirlis, Nikolaos

Advances and challenges in understanding evolution through genome comparison: meeting report of the European Molecular Biology Organization (EMBO) lecture course "Evolutionary and Comparative Genomics"

This perspective outlines emerging trends, key challenges, and future opportunities in evolutionary and comparative genomics. Our starting point are the topics presented at the 2024 EMBO Early Career Lecture Course "Evolutionary and Comparative Genomics", which highlighted recent conceptua...

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Detalhes bibliográficos
Autores:	Gavriilidou, Athina, Stamatakis, Alexandros, Kupczok, Anne, Bista, Iliana, Jiggins, Chris D, Fernández García, Rosa María, Skourtanioti, Eirini, Amoutzias, Grigoris, Delneri, Daniela, Kyrpides, Nikos, Nikolaou, Christoforos, Pittis, Alexandros A, Manousaki, Tereza, Vakirlis, Nikolaos
Formato:	artículo
Estado:	Versión publicada
Fecha de publicación:	2025
País:	España
Recursos:	Consejo Superior de Investigaciones Científicas (CSIC)
Repositorio:	DIGITAL.CSIC. Repositorio Institucional del CSIC
OAI Identifier:	oai:digital.csic.es:10261/423929
Acesso em linha:	http://hdl.handle.net/10261/423929 https://api.elsevier.com/content/abstract/scopus_id/105020316418
Access Level:	acceso abierto

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spelling	Advances and challenges in understanding evolution through genome comparison: meeting report of the European Molecular Biology Organization (EMBO) lecture course "Evolutionary and Comparative Genomics"Gavriilidou, AthinaStamatakis, AlexandrosKupczok, AnneBista, IlianaJiggins, Chris DFernández García, Rosa MaríaSkourtanioti, EiriniAmoutzias, GrigorisDelneri, DanielaKyrpides, NikosNikolaou, ChristoforosPittis, Alexandros AManousaki, TerezaVakirlis, NikolaosThis perspective outlines emerging trends, key challenges, and future opportunities in evolutionary and comparative genomics. Our starting point are the topics presented at the 2024 EMBO Early Career Lecture Course "Evolutionary and Comparative Genomics", which highlighted recent conceptual and methodological advances in areas ranging from microbial pangenomes, protein evolution, hybrid speciation, novel gene origination and transposon dynamics. Here, we emphasize the role of computational and molecular approaches, providing a forward-looking view on where the field is headed and how it is being reshaped by new technologies and approaches.This work has been supported by the Institut Pasteur through a G4 grant (to N.V.). This work has been supported by the Centre for Translational Biodiversity Genomics (LOEWE-TBG) and the program LOEWE–Landes-Offensive zur Entwick-lung Wissenschaftlich-ökonomischer Exzellenz of Hesse’s Ministry of Higher Education, Research, and the Arts (to I.B). N.K. was supported by the US DOE JGI (https://ror.org/04xm1d337), a DOE Office of Science User Facility, supported by the Office of Science of the US DOE operated under contract no. DE-AC02-05CH11231.Peer reviewedOxford University PressInstitut PasteurLOEWE Centre for Translational Biodiversity GenomicsHelmholtz Research Academy Hesse for FAIRGavriilidou, Athina [0000-0002-6805-3868]Kupczok, Anne [0000-0001-5237-1899]Jiggins, Chris D [0000-0002-7809-062X]Fernández García, Rosa María [0000-0002-4719-6640]Delneri, Daniela [0000-0001-8070-411X]Kyrpides, Nikos [0000-0002-6131-0462]Vakirlis, Nikolaos [0000-0001-7606-6987]Consejo Superior de Investigaciones Científicas [https://ror.org/02gfc7t72]202620262025info:eu-repo/semantics/articlehttp://purl.org/coar/resource_type/c_6501Publisher's versioninfo:eu-repo/semantics/publishedVersionapplication/pdfhttp://hdl.handle.net/10261/423929https://api.elsevier.com/content/abstract/scopus_id/105020316418reponame:DIGITAL.CSIC. Repositorio Institucional del CSICinstname:Consejo Superior de Investigaciones Científicas (CSIC)Ingléshttp://dx.doi.org/10.1093/bioadv/vbaf223Síinfo:eu-repo/semantics/openAccessoai:digital.csic.es:10261/4239292026-05-22T06:33:51Z
dc.title.none.fl_str_mv	Advances and challenges in understanding evolution through genome comparison: meeting report of the European Molecular Biology Organization (EMBO) lecture course "Evolutionary and Comparative Genomics"
title	Advances and challenges in understanding evolution through genome comparison: meeting report of the European Molecular Biology Organization (EMBO) lecture course "Evolutionary and Comparative Genomics"
spellingShingle	Advances and challenges in understanding evolution through genome comparison: meeting report of the European Molecular Biology Organization (EMBO) lecture course "Evolutionary and Comparative Genomics" Gavriilidou, Athina
title_short	Advances and challenges in understanding evolution through genome comparison: meeting report of the European Molecular Biology Organization (EMBO) lecture course "Evolutionary and Comparative Genomics"
title_full	Advances and challenges in understanding evolution through genome comparison: meeting report of the European Molecular Biology Organization (EMBO) lecture course "Evolutionary and Comparative Genomics"
title_fullStr	Advances and challenges in understanding evolution through genome comparison: meeting report of the European Molecular Biology Organization (EMBO) lecture course "Evolutionary and Comparative Genomics"
title_full_unstemmed	Advances and challenges in understanding evolution through genome comparison: meeting report of the European Molecular Biology Organization (EMBO) lecture course "Evolutionary and Comparative Genomics"
title_sort	Advances and challenges in understanding evolution through genome comparison: meeting report of the European Molecular Biology Organization (EMBO) lecture course "Evolutionary and Comparative Genomics"
dc.creator.none.fl_str_mv	Gavriilidou, Athina Stamatakis, Alexandros Kupczok, Anne Bista, Iliana Jiggins, Chris D Fernández García, Rosa María Skourtanioti, Eirini Amoutzias, Grigoris Delneri, Daniela Kyrpides, Nikos Nikolaou, Christoforos Pittis, Alexandros A Manousaki, Tereza Vakirlis, Nikolaos
author	Gavriilidou, Athina
author_facet	Gavriilidou, Athina Stamatakis, Alexandros Kupczok, Anne Bista, Iliana Jiggins, Chris D Fernández García, Rosa María Skourtanioti, Eirini Amoutzias, Grigoris Delneri, Daniela Kyrpides, Nikos Nikolaou, Christoforos Pittis, Alexandros A Manousaki, Tereza Vakirlis, Nikolaos
author_role	author
author2	Stamatakis, Alexandros Kupczok, Anne Bista, Iliana Jiggins, Chris D Fernández García, Rosa María Skourtanioti, Eirini Amoutzias, Grigoris Delneri, Daniela Kyrpides, Nikos Nikolaou, Christoforos Pittis, Alexandros A Manousaki, Tereza Vakirlis, Nikolaos
author2_role	author author author author author author author author author author author author author
dc.contributor.none.fl_str_mv	Institut Pasteur LOEWE Centre for Translational Biodiversity Genomics Helmholtz Research Academy Hesse for FAIR Gavriilidou, Athina [0000-0002-6805-3868] Kupczok, Anne [0000-0001-5237-1899] Jiggins, Chris D [0000-0002-7809-062X] Fernández García, Rosa María [0000-0002-4719-6640] Delneri, Daniela [0000-0001-8070-411X] Kyrpides, Nikos [0000-0002-6131-0462] Vakirlis, Nikolaos [0000-0001-7606-6987] Consejo Superior de Investigaciones Científicas [https://ror.org/02gfc7t72]
description	This perspective outlines emerging trends, key challenges, and future opportunities in evolutionary and comparative genomics. Our starting point are the topics presented at the 2024 EMBO Early Career Lecture Course "Evolutionary and Comparative Genomics", which highlighted recent conceptual and methodological advances in areas ranging from microbial pangenomes, protein evolution, hybrid speciation, novel gene origination and transposon dynamics. Here, we emphasize the role of computational and molecular approaches, providing a forward-looking view on where the field is headed and how it is being reshaped by new technologies and approaches.
publishDate	2025
dc.date.none.fl_str_mv	2025 2026 2026
dc.type.none.fl_str_mv	info:eu-repo/semantics/article http://purl.org/coar/resource_type/c_6501 Publisher's version info:eu-repo/semantics/publishedVersion
format	article
status_str	publishedVersion
dc.identifier.none.fl_str_mv	http://hdl.handle.net/10261/423929 https://api.elsevier.com/content/abstract/scopus_id/105020316418
url	http://hdl.handle.net/10261/423929 https://api.elsevier.com/content/abstract/scopus_id/105020316418
dc.language.none.fl_str_mv	Inglés
language_invalid_str_mv	Inglés
dc.relation.none.fl_str_mv	http://dx.doi.org/10.1093/bioadv/vbaf223 Sí
dc.rights.none.fl_str_mv	info:eu-repo/semantics/openAccess
eu_rights_str_mv	openAccess
dc.format.none.fl_str_mv	application/pdf
dc.publisher.none.fl_str_mv	Oxford University Press
publisher.none.fl_str_mv	Oxford University Press
dc.source.none.fl_str_mv	reponame:DIGITAL.CSIC. Repositorio Institucional del CSIC instname:Consejo Superior de Investigaciones Científicas (CSIC)
instname_str	Consejo Superior de Investigaciones Científicas (CSIC)
reponame_str	DIGITAL.CSIC. Repositorio Institucional del CSIC
collection	DIGITAL.CSIC. Repositorio Institucional del CSIC
repository.name.fl_str_mv
repository.mail.fl_str_mv
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Advances and challenges in understanding evolution through genome comparison: meeting report of the European Molecular Biology Organization (EMBO) lecture course "Evolutionary and Comparative Genomics"

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