AntNetAlign—A software package for Network Alignment

Original software publication.

Detalhes bibliográficos
Autores: Rodríguez-Corominas, Guillem, Blesa, María Jesús, Blum, Christian
Formato: artículo
Estado:Versión publicada
Fecha de publicación:2023
País:España
Recursos:Consejo Superior de Investigaciones Científicas (CSIC)
Repositorio:DIGITAL.CSIC. Repositorio Institucional del CSIC
OAI Identifier:oai:digital.csic.es:10261/404523
Acesso em linha:http://hdl.handle.net/10261/404523
https://api.elsevier.com/content/abstract/scopus_id/85148067613
Access Level:acceso abierto
Palavra-chave:Ant Colony Optimization
Network alignment
Open source software
Optimization
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spelling AntNetAlign—A software package for Network AlignmentRodríguez-Corominas, GuillemBlesa, María JesúsBlum, ChristianAnt Colony OptimizationNetwork alignmentOpen source softwareOptimizationOriginal software publication.In this paper we introduce AntNetAlign, an open-source tool (written in C++) that implements an Ant Colony Optimization (ACO) for solving the Network Alignment (NA) problem, a well-known hard optimization problem with important applications in different areas, such as biology or social networks. Specifically, given two input networks, the tool finds an alignment between them (i.e., a mapping between the respective nodes) that optimizes one out of the three main topological measures. Additionally, it can make use of user-defined pairwise similarities between nodes during its construction phase, allowing for the use of more application-dependent information in order to increase its performance. Results show that AntNetAlign outperforms other state-of-the-art algorithms in two out of the three aforementioned topological scores within a reasonable amount of time, and is able to achieve competitive results in the context of larger instances (Rodríguez Corominas et al., 2023). Furthermore, a new version of the algorithm, which makes use of Negative Learning, was able to further improve these results, specially in the EC score (Corominas et al., 2022).Guillem Rodríguez Corominas gets support from the Department of Research and Universities of the Government of Catalonia by means of an ESF-founded pre-doctoral grant of the Catalan Agency for Management of University and Research Grants (AGAUR, Catalonia, Spain), under ref. number 2022 FI_B 00903. Christian Blum was supported by two grants funded by MCIN/AEI/10.13039/501100011033: AEI, Spain PID2019-104156GB-I00, and TED2021-129319B-I00. Maria J. Blesa acknowledges support from AEI, Spain under grant PID-2020-112581GB-C21 (MOTION) and the Catalan Agency for Management of University and Research Grants (AGAUR , Catalonia, Spain), under grant 2021-SGR-01419 (ALBCOM).Peer reviewedElsevier BVGeneralitat de CatalunyaAgencia Estatal de Investigación (España)Ministerio de Ciencia, Innovación y Universidades (España)Rodríguez-Corominas, Guillem [0000-0002-3863-2017]Blesa, María Jesús [0000-0001-8246-9926]Blum, Christian [0000-0002-1736-3559]Consejo Superior de Investigaciones Científicas [https://ror.org/02gfc7t72]202520252023info:eu-repo/semantics/articlehttp://purl.org/coar/resource_type/c_6501Publisher's versioninfo:eu-repo/semantics/publishedVersionapplication/pdfhttp://hdl.handle.net/10261/404523https://api.elsevier.com/content/abstract/scopus_id/85148067613reponame:DIGITAL.CSIC. Repositorio Institucional del CSICinstname:Consejo Superior de Investigaciones Científicas (CSIC)Inglés#PLACEHOLDER_PARENT_METADATA_VALUE##PLACEHOLDER_PARENT_METADATA_VALUE##PLACEHOLDER_PARENT_METADATA_VALUE#info:eu-repo/grantAgreement/AEI/Plan Estatal de Investigación Científica y Técnica y de Innovación 2017-2020/PID2019-104156GB-I00info:eu-repo/grantAgreement/AEI//TED2021-129319B-I00info:eu-repo/grantAgreement/AEI/Plan Estatal de Investigación Científica y Técnica y de Innovación 2017-2020/PID2020-112581GB-C21Rodríguez-Corominas, Guillem; Blum, Christian; Blesa, María Jesús. 2023. AntNetAlign: Ant Colony Optimization for Network Alignment. https://doi.org/10.1016/j.asoc.2022.109832. http://hdl.handle.net/10261/257837https://doi.org/10.1016/j.simpa.2023.100476Síinfo:eu-repo/semantics/openAccessoai:digital.csic.es:10261/4045232026-05-22T06:33:51Z
dc.title.none.fl_str_mv AntNetAlign—A software package for Network Alignment
title AntNetAlign—A software package for Network Alignment
spellingShingle AntNetAlign—A software package for Network Alignment
Rodríguez-Corominas, Guillem
Ant Colony Optimization
Network alignment
Open source software
Optimization
title_short AntNetAlign—A software package for Network Alignment
title_full AntNetAlign—A software package for Network Alignment
title_fullStr AntNetAlign—A software package for Network Alignment
title_full_unstemmed AntNetAlign—A software package for Network Alignment
title_sort AntNetAlign—A software package for Network Alignment
dc.creator.none.fl_str_mv Rodríguez-Corominas, Guillem
Blesa, María Jesús
Blum, Christian
author Rodríguez-Corominas, Guillem
author_facet Rodríguez-Corominas, Guillem
Blesa, María Jesús
Blum, Christian
author_role author
author2 Blesa, María Jesús
Blum, Christian
author2_role author
author
dc.contributor.none.fl_str_mv Generalitat de Catalunya
Agencia Estatal de Investigación (España)
Ministerio de Ciencia, Innovación y Universidades (España)
Rodríguez-Corominas, Guillem [0000-0002-3863-2017]
Blesa, María Jesús [0000-0001-8246-9926]
Blum, Christian [0000-0002-1736-3559]
Consejo Superior de Investigaciones Científicas [https://ror.org/02gfc7t72]
dc.subject.none.fl_str_mv Ant Colony Optimization
Network alignment
Open source software
Optimization
topic Ant Colony Optimization
Network alignment
Open source software
Optimization
description Original software publication.
publishDate 2023
dc.date.none.fl_str_mv 2023
2025
2025
dc.type.none.fl_str_mv info:eu-repo/semantics/article
http://purl.org/coar/resource_type/c_6501
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dc.identifier.none.fl_str_mv http://hdl.handle.net/10261/404523
https://api.elsevier.com/content/abstract/scopus_id/85148067613
url http://hdl.handle.net/10261/404523
https://api.elsevier.com/content/abstract/scopus_id/85148067613
dc.language.none.fl_str_mv Inglés
language_invalid_str_mv Inglés
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info:eu-repo/grantAgreement/AEI//TED2021-129319B-I00
info:eu-repo/grantAgreement/AEI/Plan Estatal de Investigación Científica y Técnica y de Innovación 2017-2020/PID2020-112581GB-C21
Rodríguez-Corominas, Guillem; Blum, Christian; Blesa, María Jesús. 2023. AntNetAlign: Ant Colony Optimization for Network Alignment. https://doi.org/10.1016/j.asoc.2022.109832. http://hdl.handle.net/10261/257837
https://doi.org/10.1016/j.simpa.2023.100476
Sí
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eu_rights_str_mv openAccess
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dc.publisher.none.fl_str_mv Elsevier BV
publisher.none.fl_str_mv Elsevier BV
dc.source.none.fl_str_mv reponame:DIGITAL.CSIC. Repositorio Institucional del CSIC
instname:Consejo Superior de Investigaciones Científicas (CSIC)
instname_str Consejo Superior de Investigaciones Científicas (CSIC)
reponame_str DIGITAL.CSIC. Repositorio Institucional del CSIC
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