The influence of landscape configuration and environment on population genetic structure in a sedentary passerine: insights from loci located in different genomic regions

The study of the factors structuring genetic variation can help to infer the neutral and adaptive processes shaping the demographic and evolutionary trajectories of natural populations. Here, we analyse the role of isolation by distance (IBD), isolation by resistance (IBR, defined by landscape compo...

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Autores: Ferrer, Esperanza S., García-Navas, Vicente, Bueno-Enciso, Javier, Barrientos, Rafael, Serrano-Davies, Eva, Cáliz-Campal, Conchita, Sanz, Juan José, Ortego, Joaquín
Tipo de recurso: artículo
Estado:Versión aceptada para publicación
Fecha de publicación:2016
País:España
Institución:Consejo Superior de Investigaciones Científicas (CSIC)
Repositorio:DIGITAL.CSIC. Repositorio Institucional del CSIC
OAI Identifier:oai:digital.csic.es:10261/128736
Acceso en línea:http://hdl.handle.net/10261/128736
Access Level:acceso abierto
Palabra clave:Cyanistes caeruleus
Gene flow
Isolation-by-distance
Isolation-by-environment
Isolation-by-resistance
Multiple matrix regression
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spelling The influence of landscape configuration and environment on population genetic structure in a sedentary passerine: insights from loci located in different genomic regionsFerrer, Esperanza S.García-Navas, VicenteBueno-Enciso, JavierBarrientos, RafaelSerrano-Davies, EvaCáliz-Campal, ConchitaSanz, Juan JoséOrtego, JoaquínCyanistes caeruleusGene flowIsolation-by-distanceIsolation-by-environmentIsolation-by-resistanceMultiple matrix regressionThe study of the factors structuring genetic variation can help to infer the neutral and adaptive processes shaping the demographic and evolutionary trajectories of natural populations. Here, we analyse the role of isolation by distance (IBD), isolation by resistance (IBR, defined by landscape composition) and isolation by environment (IBE, estimated as habitat and elevation dissimilarity) in structuring genetic variation in 25 blue tit (Cyanistes caeruleus) populations. We typed 1385 individuals at 26 microsatellite loci classified into two groups by considering whether they are located into genomic regions that are actively (TL; 12 loci) or not (NTL; 14 loci) transcribed to RNA. Population genetic differentiation was mostly detected using the panel of NTL. Landscape genetic analyses showed a pattern of IBD for all loci and the panel of NTL, but genetic differentiation estimated at TL was only explained by IBR models considering high resistance for natural vegetation and low resistance for agricultural lands. Finally, the absence for IBE suggests a lack of divergent selection pressures associated with differences in habitat and elevation. Overall, our study shows that markers located in different genomic regions can yield contrasting inferences on landscape-level patterns of realized gene flow in natural populations.This study was funded by grants 69/2003(Organismo Autónomo de Parques Nacionales-Ministerio de Medio Ambiente), GCL2007-61395 (Ministerio de Educación y Ciencia), CGL2010-21933-C02-01(Ministerio de Ciencia e Innovación) and POIC10-0269-7632 (Junta de Comunidades de Castilla-La Mancha-European Social Fund). ESF and JBE are supported by a PhD scholarship from Junta de Comunidades de Castilla-La Mancha-European Social Fund, VGN is supported by a Forschungskredit of the University of Zurich (FK-14-103), RB is supported by a Juan de la Cierva fellowship (Ministerio de Ciencia e Innovación), ESD is supported by a PhD scholarship from Ministerio de Ciencia e Innovación-European Social Fund (FPIProgram), and JO is supported by research contracts funded by Severo Ochoa (SEV-2012-0262) and Ramón y Cajal (RYC-2013-12501) Programs.Peer reviewedEuropean Society of Evolutionary BiologyJohn Wiley & SonsEuropean CommissionMinisterio de Ciencia e Innovación (España)Organismo Autónomo Parques Nacionales (España)Ministerio de Medio Ambiente (España)Junta de Comunidades de Castilla-La ManchaETH ZurichConsejo Superior de Investigaciones Científicas [https://ror.org/02gfc7t72]201620162016info:eu-repo/semantics/articlehttp://purl.org/coar/resource_type/c_6501Postprintinfo:eu-repo/semantics/acceptedVersionhttp://hdl.handle.net/10261/128736reponame:DIGITAL.CSIC. Repositorio Institucional del CSICinstname:Consejo Superior de Investigaciones Científicas (CSIC)Ingléshttp://dx.doi.org/10.1111/jeb.12776Síinfo:eu-repo/semantics/openAccessoai:digital.csic.es:10261/1287362026-05-22T06:33:51Z
dc.title.none.fl_str_mv The influence of landscape configuration and environment on population genetic structure in a sedentary passerine: insights from loci located in different genomic regions
title The influence of landscape configuration and environment on population genetic structure in a sedentary passerine: insights from loci located in different genomic regions
spellingShingle The influence of landscape configuration and environment on population genetic structure in a sedentary passerine: insights from loci located in different genomic regions
Ferrer, Esperanza S.
Cyanistes caeruleus
Gene flow
Isolation-by-distance
Isolation-by-environment
Isolation-by-resistance
Multiple matrix regression
title_short The influence of landscape configuration and environment on population genetic structure in a sedentary passerine: insights from loci located in different genomic regions
title_full The influence of landscape configuration and environment on population genetic structure in a sedentary passerine: insights from loci located in different genomic regions
title_fullStr The influence of landscape configuration and environment on population genetic structure in a sedentary passerine: insights from loci located in different genomic regions
title_full_unstemmed The influence of landscape configuration and environment on population genetic structure in a sedentary passerine: insights from loci located in different genomic regions
title_sort The influence of landscape configuration and environment on population genetic structure in a sedentary passerine: insights from loci located in different genomic regions
dc.creator.none.fl_str_mv Ferrer, Esperanza S.
García-Navas, Vicente
Bueno-Enciso, Javier
Barrientos, Rafael
Serrano-Davies, Eva
Cáliz-Campal, Conchita
Sanz, Juan José
Ortego, Joaquín
author Ferrer, Esperanza S.
author_facet Ferrer, Esperanza S.
García-Navas, Vicente
Bueno-Enciso, Javier
Barrientos, Rafael
Serrano-Davies, Eva
Cáliz-Campal, Conchita
Sanz, Juan José
Ortego, Joaquín
author_role author
author2 García-Navas, Vicente
Bueno-Enciso, Javier
Barrientos, Rafael
Serrano-Davies, Eva
Cáliz-Campal, Conchita
Sanz, Juan José
Ortego, Joaquín
author2_role author
author
author
author
author
author
author
dc.contributor.none.fl_str_mv European Commission
Ministerio de Ciencia e Innovación (España)
Organismo Autónomo Parques Nacionales (España)
Ministerio de Medio Ambiente (España)
Junta de Comunidades de Castilla-La Mancha
ETH Zurich
Consejo Superior de Investigaciones Científicas [https://ror.org/02gfc7t72]
dc.subject.none.fl_str_mv Cyanistes caeruleus
Gene flow
Isolation-by-distance
Isolation-by-environment
Isolation-by-resistance
Multiple matrix regression
topic Cyanistes caeruleus
Gene flow
Isolation-by-distance
Isolation-by-environment
Isolation-by-resistance
Multiple matrix regression
description The study of the factors structuring genetic variation can help to infer the neutral and adaptive processes shaping the demographic and evolutionary trajectories of natural populations. Here, we analyse the role of isolation by distance (IBD), isolation by resistance (IBR, defined by landscape composition) and isolation by environment (IBE, estimated as habitat and elevation dissimilarity) in structuring genetic variation in 25 blue tit (Cyanistes caeruleus) populations. We typed 1385 individuals at 26 microsatellite loci classified into two groups by considering whether they are located into genomic regions that are actively (TL; 12 loci) or not (NTL; 14 loci) transcribed to RNA. Population genetic differentiation was mostly detected using the panel of NTL. Landscape genetic analyses showed a pattern of IBD for all loci and the panel of NTL, but genetic differentiation estimated at TL was only explained by IBR models considering high resistance for natural vegetation and low resistance for agricultural lands. Finally, the absence for IBE suggests a lack of divergent selection pressures associated with differences in habitat and elevation. Overall, our study shows that markers located in different genomic regions can yield contrasting inferences on landscape-level patterns of realized gene flow in natural populations.
publishDate 2016
dc.date.none.fl_str_mv 2016
2016
2016
dc.type.none.fl_str_mv info:eu-repo/semantics/article
http://purl.org/coar/resource_type/c_6501
Postprint
info:eu-repo/semantics/acceptedVersion
format article
status_str acceptedVersion
dc.identifier.none.fl_str_mv http://hdl.handle.net/10261/128736
url http://hdl.handle.net/10261/128736
dc.language.none.fl_str_mv Inglés
language_invalid_str_mv Inglés
dc.relation.none.fl_str_mv http://dx.doi.org/10.1111/jeb.12776
Sí
dc.rights.none.fl_str_mv info:eu-repo/semantics/openAccess
eu_rights_str_mv openAccess
dc.publisher.none.fl_str_mv European Society of Evolutionary Biology
John Wiley & Sons
publisher.none.fl_str_mv European Society of Evolutionary Biology
John Wiley & Sons
dc.source.none.fl_str_mv reponame:DIGITAL.CSIC. Repositorio Institucional del CSIC
instname:Consejo Superior de Investigaciones Científicas (CSIC)
instname_str Consejo Superior de Investigaciones Científicas (CSIC)
reponame_str DIGITAL.CSIC. Repositorio Institucional del CSIC
collection DIGITAL.CSIC. Repositorio Institucional del CSIC
repository.name.fl_str_mv
repository.mail.fl_str_mv
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score 15,811543

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