SALAI-Net: species-agnostic local ancestry inference network

Availability and implementation: We provide an open source implementation and links to publicly available data at github.com/AI-sandbox/SALAI-Net. Data is publicly available as follows: https://www.internationalgenome.org (1000 Genomes), https://www.simonsfoundation.org/simons-genome-diversity-proje...

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Bibliographic Details
Authors: Oriol Sabat, Benet, Mas Montserrat, Daniel, Giró Nieto, Xavier|||0000-0002-9935-5332, Ioannidis, Alexander
Format: article
Publication Date:2022
Country:España
Institution:Universitat Politècnica de Catalunya (UPC)
Repository:UPCommons. Portal del coneixement obert de la UPC
Language:English
OAI Identifier:oai:upcommons.upc.edu:2117/375450
Online Access:https://hdl.handle.net/2117/375450
https://dx.doi.org/10.1093/bioinformatics/btac464
Access Level:Open access
Keyword:Bioinformatics
Genome
Local ancestry inference
Bioinformàtica
Àrees temàtiques de la UPC::Informàtica::Aplicacions de la informàtica::Bioinformàtica
Description
Summary:Availability and implementation: We provide an open source implementation and links to publicly available data at github.com/AI-sandbox/SALAI-Net. Data is publicly available as follows: https://www.internationalgenome.org (1000 Genomes), https://www.simonsfoundation.org/simons-genome-diversity-project (Simons Genome Diversity Project), https://www.sanger.ac.uk/resources/downloads/human/hapmap3.html (HapMap), ftp://ngs.sanger.ac.uk/production/hgdp/hgdp_wgs.20190516 (Human Genome Diversity Project) and https://www.ncbi.nlm.nih.gov/bioproject/PRJNA448733 (Canid genomes).

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