Gene regulatory dynamics during the development of a paleopteran insect, the mayfly Cloeon dipterum
The evolution of insects has been marked by the appearance of key body plan innovations that promoted the outstanding ability of this lineage to adapt to new habitats, boosting the most successful radiation in animals. To understand the evolution of these new structures, it is essential to investiga...
| Autores: | , , , , , , |
|---|---|
| Tipo de recurso: | artículo |
| Estado: | Versión publicada |
| Fecha de publicación: | 2024 |
| País: | España |
| Institución: | Universidad de Barcelona |
| Repositorio: | Dipòsit Digital de la UB |
| OAI Identifier: | oai:diposit.ub.edu:2445/215692 |
| Acceso en línea: | https://hdl.handle.net/2445/215692 |
| Access Level: | acceso abierto |
| Palabra clave: | Efemeròpters Regulació genètica Insectes Mayflies Genetic regulation Insects |
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Gene regulatory dynamics during the development of a paleopteran insect, the mayfly Cloeon dipterumPallarès Albanell, JoanOrtega-Flores, LaiaSènar-Serra, Tot Ruiz Vicaria, Antonio-AlejandroAbril Ferrando, Josep Francesc, 1970-Rosselló Xamena, MariaAlmudí Cabrero, IsabelEfemeròptersRegulació genèticaInsectesMayfliesGenetic regulationInsectsThe evolution of insects has been marked by the appearance of key body plan innovations that promoted the outstanding ability of this lineage to adapt to new habitats, boosting the most successful radiation in animals. To understand the evolution of these new structures, it is essential to investigate which are the genes and gene regulatory networks participating during the embryonic development of insects. Great efforts have been made to fully understand gene expression and gene regulation during the development of holometabolous insects, in particular <em>Drosophila melanogaster</em>. Conversely, functional genomics resources and databases in other insect lineages are scarce. To provide a new platform to study gene regulation in insects, we generated ATAC-seq (Assay for transposase-Accessible Chromatin) for the first time during the development of the mayfly <em>Cloeon dipterum</em>, which belongs to Paleoptera, the sister group to all other winged insects. With these comprehensive datasets along six developmental stages, we characterised pronounced changes in accessible chromatin between early and late embryogenesis. The application of ATAC-seq in mayflies provides a fundamental resource to understand the evolution of gene regulation in insects.The Company of Biologists2024info:eu-repo/semantics/articleinfo:eu-repo/semantics/publishedVersionapplication/pdfhttps://hdl.handle.net/2445/215692Articles publicats en revistes (Genètica, Microbiologia i Estadística)reponame:Dipòsit Digital de la UBinstname:Universidad de BarcelonaInglésReproducció del document publicat a: https://doi.org/10.1242/dev.203017Development, 2024, vol. 151, num.20, p. 1-9https://doi.org/10.1242/dev.203017(c) Joan Pallares-Albanell et al., 2024info:eu-repo/semantics/openAccessoai:diposit.ub.edu:2445/2156922026-05-27T06:46:51Z |
| dc.title.none.fl_str_mv |
Gene regulatory dynamics during the development of a paleopteran insect, the mayfly Cloeon dipterum |
| title |
Gene regulatory dynamics during the development of a paleopteran insect, the mayfly Cloeon dipterum |
| spellingShingle |
Gene regulatory dynamics during the development of a paleopteran insect, the mayfly Cloeon dipterum Pallarès Albanell, Joan Efemeròpters Regulació genètica Insectes Mayflies Genetic regulation Insects |
| title_short |
Gene regulatory dynamics during the development of a paleopteran insect, the mayfly Cloeon dipterum |
| title_full |
Gene regulatory dynamics during the development of a paleopteran insect, the mayfly Cloeon dipterum |
| title_fullStr |
Gene regulatory dynamics during the development of a paleopteran insect, the mayfly Cloeon dipterum |
| title_full_unstemmed |
Gene regulatory dynamics during the development of a paleopteran insect, the mayfly Cloeon dipterum |
| title_sort |
Gene regulatory dynamics during the development of a paleopteran insect, the mayfly Cloeon dipterum |
| dc.creator.none.fl_str_mv |
Pallarès Albanell, Joan Ortega-Flores, Laia Sènar-Serra, Tot Ruiz Vicaria, Antonio-Alejandro Abril Ferrando, Josep Francesc, 1970- Rosselló Xamena, Maria Almudí Cabrero, Isabel |
| author |
Pallarès Albanell, Joan |
| author_facet |
Pallarès Albanell, Joan Ortega-Flores, Laia Sènar-Serra, Tot Ruiz Vicaria, Antonio-Alejandro Abril Ferrando, Josep Francesc, 1970- Rosselló Xamena, Maria Almudí Cabrero, Isabel |
| author_role |
author |
| author2 |
Ortega-Flores, Laia Sènar-Serra, Tot Ruiz Vicaria, Antonio-Alejandro Abril Ferrando, Josep Francesc, 1970- Rosselló Xamena, Maria Almudí Cabrero, Isabel |
| author2_role |
author author author author author author |
| dc.subject.none.fl_str_mv |
Efemeròpters Regulació genètica Insectes Mayflies Genetic regulation Insects |
| topic |
Efemeròpters Regulació genètica Insectes Mayflies Genetic regulation Insects |
| description |
The evolution of insects has been marked by the appearance of key body plan innovations that promoted the outstanding ability of this lineage to adapt to new habitats, boosting the most successful radiation in animals. To understand the evolution of these new structures, it is essential to investigate which are the genes and gene regulatory networks participating during the embryonic development of insects. Great efforts have been made to fully understand gene expression and gene regulation during the development of holometabolous insects, in particular <em>Drosophila melanogaster</em>. Conversely, functional genomics resources and databases in other insect lineages are scarce. To provide a new platform to study gene regulation in insects, we generated ATAC-seq (Assay for transposase-Accessible Chromatin) for the first time during the development of the mayfly <em>Cloeon dipterum</em>, which belongs to Paleoptera, the sister group to all other winged insects. With these comprehensive datasets along six developmental stages, we characterised pronounced changes in accessible chromatin between early and late embryogenesis. The application of ATAC-seq in mayflies provides a fundamental resource to understand the evolution of gene regulation in insects. |
| publishDate |
2024 |
| dc.date.none.fl_str_mv |
2024 |
| dc.type.none.fl_str_mv |
info:eu-repo/semantics/article info:eu-repo/semantics/publishedVersion |
| format |
article |
| status_str |
publishedVersion |
| dc.identifier.none.fl_str_mv |
https://hdl.handle.net/2445/215692 |
| url |
https://hdl.handle.net/2445/215692 |
| dc.language.none.fl_str_mv |
Inglés |
| language_invalid_str_mv |
Inglés |
| dc.relation.none.fl_str_mv |
Reproducció del document publicat a: https://doi.org/10.1242/dev.203017 Development, 2024, vol. 151, num.20, p. 1-9 https://doi.org/10.1242/dev.203017 |
| dc.rights.none.fl_str_mv |
(c) Joan Pallares-Albanell et al., 2024 info:eu-repo/semantics/openAccess |
| rights_invalid_str_mv |
(c) Joan Pallares-Albanell et al., 2024 |
| eu_rights_str_mv |
openAccess |
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application/pdf |
| dc.publisher.none.fl_str_mv |
The Company of Biologists |
| publisher.none.fl_str_mv |
The Company of Biologists |
| dc.source.none.fl_str_mv |
Articles publicats en revistes (Genètica, Microbiologia i Estadística) reponame:Dipòsit Digital de la UB instname:Universidad de Barcelona |
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Universidad de Barcelona |
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Dipòsit Digital de la UB |
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Dipòsit Digital de la UB |
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