Papio Baboon species indicative alu elements
The genus of Papio (baboon) has six recognized species separated into Northern and Southern clades, each comprised of three species distributed across the African continent. Geographic origin and phenotypic variants such as coat color and body size have commonly been used to identify different speci...
| Autores: | , , , , , , , , , , , , |
|---|---|
| Tipo de recurso: | artículo |
| Estado: | Versión publicada |
| Fecha de publicación: | 2017 |
| País: | España |
| Institución: | Varias* (Consorci de Biblioteques Universitáries de Catalunya, Centre de Serveis Científics i Acadèmics de Catalunya) |
| Repositorio: | Recercat. Dipósit de la Recerca de Catalunya |
| OAI Identifier: | oai:recercat.cat:10230/37015 |
| Acceso en línea: | http://hdl.handle.net/10230/37015 http://dx.doi.org/10.1093/gbe/evx130 |
| Access Level: | acceso abierto |
| Palabra clave: | Retrotransposon Population genomics Evolutionary biology |
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Papio Baboon species indicative alu elementsWalker, Jerilyn A.Jordan, Vallmer E.Steely, Cody J.Beckstrom, Thomas O.McDaniel, Cullen L.St Romain, Corey P.Bennett, Emily C.Robichaux, AriannaClement, Brooke N.Konkel, Miriam K.Baboon Genome Analysis ConsortiumMarquès i Bonet, Tomàs, 1975-Batzer, Mark A.RetrotransposonPopulation genomicsEvolutionary biologyThe genus of Papio (baboon) has six recognized species separated into Northern and Southern clades, each comprised of three species distributed across the African continent. Geographic origin and phenotypic variants such as coat color and body size have commonly been used to identify different species. The existence of multiple hybrid zones, both ancient and current, have complicated efforts to characterize the phylogeny of Papio baboons. More recently, mitochondrial DNA (mtDNA) and Y-chromosome genetic markers have been utilized for species identification with particular focus on the hybrid zones. Alu elements accumulate in a random manner and are a novel source of identical by descent variation with known ancestral states for inferring population genetic and phylogenetic relationships. As part of the Baboon Genome Analysis Consortium, we assembled an Alu insertion polymorphism database of nearly 500 Papio-lineage specific insertions representing all six species and performed population structure and phylogenetic analyses. In this study, we have selected a subset of 48 species indicative Alu insertions and demonstrate their utility as genetic systems for the identification of baboon species within Papio. Individual elements from the panel are easy to genotype and can be used in a hierarchical fashion based on the original level of uncertainty. This Alu-48 panel should serve as a valuable tool during the maintenance of pedigree records in captive populations and assist in the forensic identification of fossils and potential hybrids in the wild.Oxford University Press201920192017info:eu-repo/semantics/articleinfo:eu-repo/semantics/publishedVersionapplication/pdfapplication/pdfhttp://hdl.handle.net/10230/37015http://dx.doi.org/10.1093/gbe/evx130reponame:Recercat. Dipósit de la Recerca de Catalunyainstname:Varias* (Consorci de Biblioteques Universitáries de Catalunya, Centre de Serveis Científics i Acadèmics de Catalunya)InglésGenome Biology and Evolution. 2017;9(6):1788-96© The Author 2017. Published by Oxford University Press on behalf of the Society for Molecular Biology and Evolution. This is an Open Access article distributed under the terms of the Creative Commons Attribution Non-Commercial License (http://creativecommons.org/licenses/by-nc/4.0/), which permits non-commercial re-use, distribution, and reproduction in any medium, provided the original work is properly cited. For commercial re-use, please contact journals.permissions@oup.comhttp://creativecommons.org/licenses/by-nc/4.0/info:eu-repo/semantics/openAccessoai:recercat.cat:10230/370152026-05-29T05:05:01Z |
| dc.title.none.fl_str_mv |
Papio Baboon species indicative alu elements |
| title |
Papio Baboon species indicative alu elements |
| spellingShingle |
Papio Baboon species indicative alu elements Walker, Jerilyn A. Retrotransposon Population genomics Evolutionary biology |
| title_short |
Papio Baboon species indicative alu elements |
| title_full |
Papio Baboon species indicative alu elements |
| title_fullStr |
Papio Baboon species indicative alu elements |
| title_full_unstemmed |
Papio Baboon species indicative alu elements |
| title_sort |
Papio Baboon species indicative alu elements |
| dc.creator.none.fl_str_mv |
Walker, Jerilyn A. Jordan, Vallmer E. Steely, Cody J. Beckstrom, Thomas O. McDaniel, Cullen L. St Romain, Corey P. Bennett, Emily C. Robichaux, Arianna Clement, Brooke N. Konkel, Miriam K. Baboon Genome Analysis Consortium Marquès i Bonet, Tomàs, 1975- Batzer, Mark A. |
| author |
Walker, Jerilyn A. |
| author_facet |
Walker, Jerilyn A. Jordan, Vallmer E. Steely, Cody J. Beckstrom, Thomas O. McDaniel, Cullen L. St Romain, Corey P. Bennett, Emily C. Robichaux, Arianna Clement, Brooke N. Konkel, Miriam K. Baboon Genome Analysis Consortium Marquès i Bonet, Tomàs, 1975- Batzer, Mark A. |
| author_role |
author |
| author2 |
Jordan, Vallmer E. Steely, Cody J. Beckstrom, Thomas O. McDaniel, Cullen L. St Romain, Corey P. Bennett, Emily C. Robichaux, Arianna Clement, Brooke N. Konkel, Miriam K. Baboon Genome Analysis Consortium Marquès i Bonet, Tomàs, 1975- Batzer, Mark A. |
| author2_role |
author author author author author author author author author author author author |
| dc.subject.none.fl_str_mv |
Retrotransposon Population genomics Evolutionary biology |
| topic |
Retrotransposon Population genomics Evolutionary biology |
| description |
The genus of Papio (baboon) has six recognized species separated into Northern and Southern clades, each comprised of three species distributed across the African continent. Geographic origin and phenotypic variants such as coat color and body size have commonly been used to identify different species. The existence of multiple hybrid zones, both ancient and current, have complicated efforts to characterize the phylogeny of Papio baboons. More recently, mitochondrial DNA (mtDNA) and Y-chromosome genetic markers have been utilized for species identification with particular focus on the hybrid zones. Alu elements accumulate in a random manner and are a novel source of identical by descent variation with known ancestral states for inferring population genetic and phylogenetic relationships. As part of the Baboon Genome Analysis Consortium, we assembled an Alu insertion polymorphism database of nearly 500 Papio-lineage specific insertions representing all six species and performed population structure and phylogenetic analyses. In this study, we have selected a subset of 48 species indicative Alu insertions and demonstrate their utility as genetic systems for the identification of baboon species within Papio. Individual elements from the panel are easy to genotype and can be used in a hierarchical fashion based on the original level of uncertainty. This Alu-48 panel should serve as a valuable tool during the maintenance of pedigree records in captive populations and assist in the forensic identification of fossils and potential hybrids in the wild. |
| publishDate |
2017 |
| dc.date.none.fl_str_mv |
2017 2019 2019 |
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info:eu-repo/semantics/article info:eu-repo/semantics/publishedVersion |
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article |
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publishedVersion |
| dc.identifier.none.fl_str_mv |
http://hdl.handle.net/10230/37015 http://dx.doi.org/10.1093/gbe/evx130 |
| url |
http://hdl.handle.net/10230/37015 http://dx.doi.org/10.1093/gbe/evx130 |
| dc.language.none.fl_str_mv |
Inglés |
| language_invalid_str_mv |
Inglés |
| dc.relation.none.fl_str_mv |
Genome Biology and Evolution. 2017;9(6):1788-96 |
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http://creativecommons.org/licenses/by-nc/4.0/ info:eu-repo/semantics/openAccess |
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http://creativecommons.org/licenses/by-nc/4.0/ |
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openAccess |
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application/pdf application/pdf |
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Oxford University Press |
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Oxford University Press |
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reponame:Recercat. Dipósit de la Recerca de Catalunya instname:Varias* (Consorci de Biblioteques Universitáries de Catalunya, Centre de Serveis Científics i Acadèmics de Catalunya) |
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Varias* (Consorci de Biblioteques Universitáries de Catalunya, Centre de Serveis Científics i Acadèmics de Catalunya) |
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Recercat. Dipósit de la Recerca de Catalunya |
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Recercat. Dipósit de la Recerca de Catalunya |
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