An improved reference of the PN40024 grapevine genome assembly (PN40024.v4) and annotations

Here, we provide an improved version of the PN40024 genome assembly, called PN40024.v4, which combines the top-quality Sanger contigs from the 12X version with Pacific Biosciences long reads (Sequel SMRT). Along with this new assembly, we also provide a new version of the gene annotation, called PN4...

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Detalles Bibliográficos
Autores: Velt, Amandine, Frommer, Bianca, Blanc, Sophie, Holtgräwe, Daniela, Duchêne, Éric, Dumas, Vincent, Grimplet, Jérôme, Hugueney, Philippe, Kim, Catherine, Lahaye, Marie, Matus, José Tomás, Navarro-Payá, David, Orduña, Luis, Tello-Ruiz, Marcela K., Vitulo, Nicola, Ware, Doreen, Rustenholz, Camille
Tipo de recurso: conjunto de datos
Fecha de publicación:2022
País:España
Institución:Consejo Superior de Investigaciones Científicas (CSIC)
Repositorio:DIGITAL.CSIC. Repositorio Institucional del CSIC
OAI Identifier:oai:digital.csic.es:10261/334855
Acceso en línea:http://hdl.handle.net/10261/334855
Access Level:acceso abierto
Descripción
Sumario:Here, we provide an improved version of the PN40024 genome assembly, called PN40024.v4, which combines the top-quality Sanger contigs from the 12X version with Pacific Biosciences long reads (Sequel SMRT). Along with this new assembly, we also provide a new version of the gene annotation, called PN40024.v4.1 based on a newly developed annotation workflow, RNA-Seq datasets and manual curation of a set of genes of functional interest to the community. English (2022-10-28)