Microbiomes of Thalassia testudinum throughout the Atlantic Ocean, Caribbean Sea, and Gulf of Mexico are influenced by site and region while maintaining a core microbiome
Plant microbiomes are known to serve several important functions for their host, and it is therefore important to understand their composition as well as the factors that may influence these microbial communities. The microbiome of Thalassia testudinum has only recently been explored, and studies to...
| Autores: | , , , , , , , , , , , , , , , , , , , , , , , , , |
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| Tipo de documento: | artigo |
| Estado: | Versão publicada |
| Data de publicação: | 2024 |
| País: | España |
| Recursos: | Consejo Superior de Investigaciones Científicas (CSIC) |
| Repositório: | DIGITAL.CSIC. Repositorio Institucional del CSIC |
| OAI Identifier: | oai:digital.csic.es:10261/387115 |
| Acesso em linha: | http://hdl.handle.net/10261/387115 https://api.elsevier.com/content/abstract/scopus_id/85186930399 |
| Access Level: | Acceso aberto |
| Palavra-chave: | Caribbean Thalassia Amplicon sequencing Core microbiome Seagrass Seagrass beds Seagrass microbiome |
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Microbiomes of Thalassia testudinum throughout the Atlantic Ocean, Caribbean Sea, and Gulf of Mexico are influenced by site and region while maintaining a core microbiomeUgarelli, KellyCampbell, Justin E.Rhoades, O. KennedyMunson, Calvin J.Altieri, Andrew H.Douglass, James G.Heck, Kenneth L. JrPaul, Valerie J.Barry, Savanna C.Christ, LindseyFourqurean, James W.Frazer, Thomas K.Linhardt, Samantha T.Martin, Charles W.McDonald, Ashley M.Main, Vivienne A.Manuel, Sarah A.Marco-Méndez, CandelaReynolds, Laura KRodríguez, AlexRodríguez Bravo, Lucía M.Sawall, YvonneSmith, KhalilWied, William L.Choi, Chang JaeStingl, UlrichCaribbeanThalassiaAmplicon sequencingCore microbiomeSeagrassSeagrass bedsSeagrass microbiomePlant microbiomes are known to serve several important functions for their host, and it is therefore important to understand their composition as well as the factors that may influence these microbial communities. The microbiome of Thalassia testudinum has only recently been explored, and studies to-date have primarily focused on characterizing the microbiome of plants in a single region. Here, we present the first characterization of the composition of the microbial communities of T. testudinum across a wide geographical range spanning three distinct regions with varying physicochemical conditions. We collected samples of leaves, roots, sediment, and water from six sites throughout the Atlantic Ocean, Caribbean Sea, and the Gulf of Mexico. We then analyzed these samples using 16S rRNA amplicon sequencing. We found that site and region can influence the microbial communities of T. testudinum, while maintaining a plant-associated core microbiome. A comprehensive comparison of available microbial community data from T. testudinum studies determined a core microbiome composed of 14 ASVs that consisted mostly of the family Rhodobacteraceae. The most abundant genera in the microbial communities included organisms with possible plant-beneficial functions, like plant-growth promoting taxa, disease suppressing taxa, and nitrogen fixers.The author(s) declare financial support was received for the research, authorship, and/or publication of this article. This work was supported by the US National Science Foundation (OCE-1737247 to JC, AA, and VP, OCE-2019022 to JC, OCE-1737144 to KH, and OCE-1737116 to JD).Peer reviewedFrontiers MediaNational Science Foundation (US)Consejo Superior de Investigaciones Científicas [https://ror.org/02gfc7t72]202520252024info:eu-repo/semantics/articlehttp://purl.org/coar/resource_type/c_6501Publisher's versioninfo:eu-repo/semantics/publishedVersionapplication/pdfhttp://hdl.handle.net/10261/387115https://api.elsevier.com/content/abstract/scopus_id/85186930399reponame:DIGITAL.CSIC. Repositorio Institucional del CSICinstname:Consejo Superior de Investigaciones Científicas (CSIC)InglésThe underlying dataset has been published as supplementary material of the article in the publisher platform at DOI 10.3389/fmicb.2024.1357797Ugarelli, Kelly; Campbell, Justin E.; Rhoades, O. Kennedy; Munson, Calvin J.; Altieri, Andrew H.; Douglass, James G.; Heck, Kenneth L. Jr; Paul, Valerie J.; Barry, Savanna C.; Christ, Lindsey; Fourqurean, James W.; Frazer, Thomas K.; Linhardt, Samantha T.; Martin, Charles W.; McDonald, Ashley M.; Main, Vivienne A.; Manuel, Sarah A.; Marco-Méndez, Candela; Reynolds, Laura K; Rodríguez, Alex; Rodríguez Bravo, Lucía M.; Sawall, Yvonne; Smith, Khalil; Wied, William L.; Choi, Chang Jae; Stingl, Ulrich; 2024; Supplementary material: Microbiomes of Thalassia testudinum throughout the Atlantic Ocean, Caribbean Sea, and Gulf of Mexico are influenced by site and region while maintaining a core microbiome; Frontiers Media; https://doi.org/10.3389/fmicb.2024.1357797https://doi.org/10.3389/fmicb.2024.1357797Síinfo:eu-repo/semantics/openAccessoai:digital.csic.es:10261/3871152026-05-22T06:33:51Z |
| dc.title.none.fl_str_mv |
Microbiomes of Thalassia testudinum throughout the Atlantic Ocean, Caribbean Sea, and Gulf of Mexico are influenced by site and region while maintaining a core microbiome |
| title |
Microbiomes of Thalassia testudinum throughout the Atlantic Ocean, Caribbean Sea, and Gulf of Mexico are influenced by site and region while maintaining a core microbiome |
| spellingShingle |
Microbiomes of Thalassia testudinum throughout the Atlantic Ocean, Caribbean Sea, and Gulf of Mexico are influenced by site and region while maintaining a core microbiome Ugarelli, Kelly Caribbean Thalassia Amplicon sequencing Core microbiome Seagrass Seagrass beds Seagrass microbiome |
| title_short |
Microbiomes of Thalassia testudinum throughout the Atlantic Ocean, Caribbean Sea, and Gulf of Mexico are influenced by site and region while maintaining a core microbiome |
| title_full |
Microbiomes of Thalassia testudinum throughout the Atlantic Ocean, Caribbean Sea, and Gulf of Mexico are influenced by site and region while maintaining a core microbiome |
| title_fullStr |
Microbiomes of Thalassia testudinum throughout the Atlantic Ocean, Caribbean Sea, and Gulf of Mexico are influenced by site and region while maintaining a core microbiome |
| title_full_unstemmed |
Microbiomes of Thalassia testudinum throughout the Atlantic Ocean, Caribbean Sea, and Gulf of Mexico are influenced by site and region while maintaining a core microbiome |
| title_sort |
Microbiomes of Thalassia testudinum throughout the Atlantic Ocean, Caribbean Sea, and Gulf of Mexico are influenced by site and region while maintaining a core microbiome |
| dc.creator.none.fl_str_mv |
Ugarelli, Kelly Campbell, Justin E. Rhoades, O. Kennedy Munson, Calvin J. Altieri, Andrew H. Douglass, James G. Heck, Kenneth L. Jr Paul, Valerie J. Barry, Savanna C. Christ, Lindsey Fourqurean, James W. Frazer, Thomas K. Linhardt, Samantha T. Martin, Charles W. McDonald, Ashley M. Main, Vivienne A. Manuel, Sarah A. Marco-Méndez, Candela Reynolds, Laura K Rodríguez, Alex Rodríguez Bravo, Lucía M. Sawall, Yvonne Smith, Khalil Wied, William L. Choi, Chang Jae Stingl, Ulrich |
| author |
Ugarelli, Kelly |
| author_facet |
Ugarelli, Kelly Campbell, Justin E. Rhoades, O. Kennedy Munson, Calvin J. Altieri, Andrew H. Douglass, James G. Heck, Kenneth L. Jr Paul, Valerie J. Barry, Savanna C. Christ, Lindsey Fourqurean, James W. Frazer, Thomas K. Linhardt, Samantha T. Martin, Charles W. McDonald, Ashley M. Main, Vivienne A. Manuel, Sarah A. Marco-Méndez, Candela Reynolds, Laura K Rodríguez, Alex Rodríguez Bravo, Lucía M. Sawall, Yvonne Smith, Khalil Wied, William L. Choi, Chang Jae Stingl, Ulrich |
| author_role |
author |
| author2 |
Campbell, Justin E. Rhoades, O. Kennedy Munson, Calvin J. Altieri, Andrew H. Douglass, James G. Heck, Kenneth L. Jr Paul, Valerie J. Barry, Savanna C. Christ, Lindsey Fourqurean, James W. Frazer, Thomas K. Linhardt, Samantha T. Martin, Charles W. McDonald, Ashley M. Main, Vivienne A. Manuel, Sarah A. Marco-Méndez, Candela Reynolds, Laura K Rodríguez, Alex Rodríguez Bravo, Lucía M. Sawall, Yvonne Smith, Khalil Wied, William L. Choi, Chang Jae Stingl, Ulrich |
| author2_role |
author author author author author author author author author author author author author author author author author author author author author author author author author |
| dc.contributor.none.fl_str_mv |
National Science Foundation (US) Consejo Superior de Investigaciones Científicas [https://ror.org/02gfc7t72] |
| dc.subject.none.fl_str_mv |
Caribbean Thalassia Amplicon sequencing Core microbiome Seagrass Seagrass beds Seagrass microbiome |
| topic |
Caribbean Thalassia Amplicon sequencing Core microbiome Seagrass Seagrass beds Seagrass microbiome |
| description |
Plant microbiomes are known to serve several important functions for their host, and it is therefore important to understand their composition as well as the factors that may influence these microbial communities. The microbiome of Thalassia testudinum has only recently been explored, and studies to-date have primarily focused on characterizing the microbiome of plants in a single region. Here, we present the first characterization of the composition of the microbial communities of T. testudinum across a wide geographical range spanning three distinct regions with varying physicochemical conditions. We collected samples of leaves, roots, sediment, and water from six sites throughout the Atlantic Ocean, Caribbean Sea, and the Gulf of Mexico. We then analyzed these samples using 16S rRNA amplicon sequencing. We found that site and region can influence the microbial communities of T. testudinum, while maintaining a plant-associated core microbiome. A comprehensive comparison of available microbial community data from T. testudinum studies determined a core microbiome composed of 14 ASVs that consisted mostly of the family Rhodobacteraceae. The most abundant genera in the microbial communities included organisms with possible plant-beneficial functions, like plant-growth promoting taxa, disease suppressing taxa, and nitrogen fixers. |
| publishDate |
2024 |
| dc.date.none.fl_str_mv |
2024 2025 2025 |
| dc.type.none.fl_str_mv |
info:eu-repo/semantics/article http://purl.org/coar/resource_type/c_6501 Publisher's version info:eu-repo/semantics/publishedVersion |
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article |
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publishedVersion |
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http://hdl.handle.net/10261/387115 https://api.elsevier.com/content/abstract/scopus_id/85186930399 |
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http://hdl.handle.net/10261/387115 https://api.elsevier.com/content/abstract/scopus_id/85186930399 |
| dc.language.none.fl_str_mv |
Inglés |
| language_invalid_str_mv |
Inglés |
| dc.relation.none.fl_str_mv |
The underlying dataset has been published as supplementary material of the article in the publisher platform at DOI 10.3389/fmicb.2024.1357797 Ugarelli, Kelly; Campbell, Justin E.; Rhoades, O. Kennedy; Munson, Calvin J.; Altieri, Andrew H.; Douglass, James G.; Heck, Kenneth L. Jr; Paul, Valerie J.; Barry, Savanna C.; Christ, Lindsey; Fourqurean, James W.; Frazer, Thomas K.; Linhardt, Samantha T.; Martin, Charles W.; McDonald, Ashley M.; Main, Vivienne A.; Manuel, Sarah A.; Marco-Méndez, Candela; Reynolds, Laura K; Rodríguez, Alex; Rodríguez Bravo, Lucía M.; Sawall, Yvonne; Smith, Khalil; Wied, William L.; Choi, Chang Jae; Stingl, Ulrich; 2024; Supplementary material: Microbiomes of Thalassia testudinum throughout the Atlantic Ocean, Caribbean Sea, and Gulf of Mexico are influenced by site and region while maintaining a core microbiome; Frontiers Media; https://doi.org/10.3389/fmicb.2024.1357797 https://doi.org/10.3389/fmicb.2024.1357797 Sí |
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Frontiers Media |
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