Next generation sequencing reveals the complete plastome sequence of newly discovered cliff-dwelling Sonchus boulosii (Asteraceae: Cichorieae) in Morocco

The complete chloroplast genome sequences of newly discovered cliff-dwelling species of Sonchus, S. boulosii, were reported in this study. The S. boulosii plastome was 152,016 bp long, with the large single copy (LSC) region of 83,988 bp, the small single copy (SSC) region of 18,566 bp, and two inve...

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Detalles Bibliográficos
Autores: Kim, Seon-Hee, Mejías Gimeno, José Antonio, Kim, Seung-Chul
Tipo de recurso: artículo
Estado:Versión publicada
Fecha de publicación:2019
País:España
Institución:Universidad de Sevilla (US)
Repositorio:idUS. Depósito de Investigación de la Universidad de Sevilla
OAI Identifier:oai:idus.us.es:11441/83784
Acceso en línea:https://hdl.handle.net/11441/83784
https://doi.org/10.1080/23802359.2018.1544865
Access Level:acceso abierto
Palabra clave:Chloroplast genome
Sonchus boulosii
Morocco
Asteraceae
Cichorieae
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repository_id_str
spelling Next generation sequencing reveals the complete plastome sequence of newly discovered cliff-dwelling Sonchus boulosii (Asteraceae: Cichorieae) in MoroccoKim, Seon-HeeMejías Gimeno, José AntonioKim, Seung-ChulChloroplast genomeSonchus boulosiiMoroccoAsteraceaeCichorieaeThe complete chloroplast genome sequences of newly discovered cliff-dwelling species of Sonchus, S. boulosii, were reported in this study. The S. boulosii plastome was 152,016 bp long, with the large single copy (LSC) region of 83,988 bp, the small single copy (SSC) region of 18,566 bp, and two inverted repeat (IR) regions of 24,731 bp. The plastome contained 130 genes, including 88 protein-coding, six ribosomal RNA, and 36 transfer RNA genes. The overall GC content was 31.2%. Phylogenetic analysis of 12 representative plastomes within the order Cichorieae suggests that S. boulosii is closely related to S. oleraceus.National Research Foundation of Korea [NRF-2016R1D1A2B03934596]Taylor & FrancisBiología Vegetal y EcologíaNational Research Foundation of Korea2019info:eu-repo/semantics/articleinfo:eu-repo/semantics/publishedVersionapplication/pdfapplication/pdfhttps://hdl.handle.net/11441/83784https://doi.org/10.1080/23802359.2018.1544865reponame:idUS. Depósito de Investigación de la Universidad de Sevillainstname:Universidad de Sevilla (US)InglésMitochondrial DNA Part B, 4 (1), 164-165.NRF-2016R1D1A2B03934596https://doi.org/10.1080/23802359.2018.1544865info:eu-repo/semantics/openAccessoai:idus.us.es:11441/837842026-06-17T12:51:07Z
dc.title.none.fl_str_mv Next generation sequencing reveals the complete plastome sequence of newly discovered cliff-dwelling Sonchus boulosii (Asteraceae: Cichorieae) in Morocco
title Next generation sequencing reveals the complete plastome sequence of newly discovered cliff-dwelling Sonchus boulosii (Asteraceae: Cichorieae) in Morocco
spellingShingle Next generation sequencing reveals the complete plastome sequence of newly discovered cliff-dwelling Sonchus boulosii (Asteraceae: Cichorieae) in Morocco
Kim, Seon-Hee
Chloroplast genome
Sonchus boulosii
Morocco
Asteraceae
Cichorieae
title_short Next generation sequencing reveals the complete plastome sequence of newly discovered cliff-dwelling Sonchus boulosii (Asteraceae: Cichorieae) in Morocco
title_full Next generation sequencing reveals the complete plastome sequence of newly discovered cliff-dwelling Sonchus boulosii (Asteraceae: Cichorieae) in Morocco
title_fullStr Next generation sequencing reveals the complete plastome sequence of newly discovered cliff-dwelling Sonchus boulosii (Asteraceae: Cichorieae) in Morocco
title_full_unstemmed Next generation sequencing reveals the complete plastome sequence of newly discovered cliff-dwelling Sonchus boulosii (Asteraceae: Cichorieae) in Morocco
title_sort Next generation sequencing reveals the complete plastome sequence of newly discovered cliff-dwelling Sonchus boulosii (Asteraceae: Cichorieae) in Morocco
dc.creator.none.fl_str_mv Kim, Seon-Hee
Mejías Gimeno, José Antonio
Kim, Seung-Chul
author Kim, Seon-Hee
author_facet Kim, Seon-Hee
Mejías Gimeno, José Antonio
Kim, Seung-Chul
author_role author
author2 Mejías Gimeno, José Antonio
Kim, Seung-Chul
author2_role author
author
dc.contributor.none.fl_str_mv Biología Vegetal y Ecología
National Research Foundation of Korea
dc.subject.none.fl_str_mv Chloroplast genome
Sonchus boulosii
Morocco
Asteraceae
Cichorieae
topic Chloroplast genome
Sonchus boulosii
Morocco
Asteraceae
Cichorieae
description The complete chloroplast genome sequences of newly discovered cliff-dwelling species of Sonchus, S. boulosii, were reported in this study. The S. boulosii plastome was 152,016 bp long, with the large single copy (LSC) region of 83,988 bp, the small single copy (SSC) region of 18,566 bp, and two inverted repeat (IR) regions of 24,731 bp. The plastome contained 130 genes, including 88 protein-coding, six ribosomal RNA, and 36 transfer RNA genes. The overall GC content was 31.2%. Phylogenetic analysis of 12 representative plastomes within the order Cichorieae suggests that S. boulosii is closely related to S. oleraceus.
publishDate 2019
dc.date.none.fl_str_mv 2019
dc.type.none.fl_str_mv info:eu-repo/semantics/article
info:eu-repo/semantics/publishedVersion
format article
status_str publishedVersion
dc.identifier.none.fl_str_mv https://hdl.handle.net/11441/83784
https://doi.org/10.1080/23802359.2018.1544865
url https://hdl.handle.net/11441/83784
https://doi.org/10.1080/23802359.2018.1544865
dc.language.none.fl_str_mv Inglés
language_invalid_str_mv Inglés
dc.relation.none.fl_str_mv Mitochondrial DNA Part B, 4 (1), 164-165.
NRF-2016R1D1A2B03934596
https://doi.org/10.1080/23802359.2018.1544865
dc.rights.none.fl_str_mv info:eu-repo/semantics/openAccess
eu_rights_str_mv openAccess
dc.format.none.fl_str_mv application/pdf
application/pdf
dc.publisher.none.fl_str_mv Taylor & Francis
publisher.none.fl_str_mv Taylor & Francis
dc.source.none.fl_str_mv reponame:idUS. Depósito de Investigación de la Universidad de Sevilla
instname:Universidad de Sevilla (US)
instname_str Universidad de Sevilla (US)
reponame_str idUS. Depósito de Investigación de la Universidad de Sevilla
collection idUS. Depósito de Investigación de la Universidad de Sevilla
repository.name.fl_str_mv
repository.mail.fl_str_mv
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score 15,300719

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