QCloud2: an improved cloud-based quality-control system for mass-spectrometry-based proteomics laboratories

QCloud is a cloud-based system to support proteomics laboratories in daily quality assessment using a user-friendly interface, easy setup, and automated data processing. Since its release, QCloud has facilitated automated quality control for proteomics experiments in many laboratories. QCloud provid...

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Detalles Bibliográficos
Autores: Olivella, Roger, Chiva, Cristina, Serret, Marc, Mancera, Daniel, Cozzuto, Luca, Hermoso Pulido, Antonio, Borràs, Eva, Espadas, Guadalupe, Morales Sanfrutos, Julia, Pastor, Olga, Solé, Amanda, Ponomarenko, Julia, Sabidó Aguadé, Eduard, 1981-
Tipo de recurso: artículo
Estado:Versión publicada
Fecha de publicación:2021
País:España
Institución:Varias* (Consorci de Biblioteques Universitáries de Catalunya, Centre de Serveis Científics i Acadèmics de Catalunya)
Repositorio:Recercat. Dipósit de la Recerca de Catalunya
OAI Identifier:oai:recercat.cat:10230/47648
Acceso en línea:http://hdl.handle.net/10230/47648
http://dx.doi.org/10.1021/acs.jproteome.0c00853
Access Level:acceso abierto
Palabra clave:Computació en núvol
Espectrometria de masses
Proteòmica
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spelling QCloud2: an improved cloud-based quality-control system for mass-spectrometry-based proteomics laboratoriesOlivella, RogerChiva, CristinaSerret, MarcMancera, DanielCozzuto, LucaHermoso Pulido, AntonioBorràs, EvaEspadas, GuadalupeMorales Sanfrutos, JuliaPastor, OlgaSolé, AmandaPonomarenko, JuliaSabidó Aguadé, Eduard, 1981-Computació en núvolEspectrometria de massesProteòmicaQCloud is a cloud-based system to support proteomics laboratories in daily quality assessment using a user-friendly interface, easy setup, and automated data processing. Since its release, QCloud has facilitated automated quality control for proteomics experiments in many laboratories. QCloud provides a quick and effortless evaluation of instrument performance that helps to overcome many analytical challenges derived from clinical and translational research. Here we present an improved version of the system, QCloud2. This new version includes enhancements in the scalability and reproducibility of the quality-control pipelines, and it features an improved front end for data visualization, user management, and chart annotation. The QCloud2 system also includes programmatic access and a standalone local version.The CRG/UPF Proteomics Unit is part of the Spanish Infrastructure for Omics Technologies (ICTS OmicsTech), and it is a member of the ProteoRed PRB3 consortium, which is supported by grant PT17/0019 of the PE I+D+i 2013−2016 from the Instituto de Salud Carlos III (ISCIII), ERDF, and “Secretaria d’Universitats i Recerca del Departament d’Econòmia i Coneixement de la Generalitat de Catalunya” (2017SGR595). This project was supported by EPIC-XS, project number 823839, funded by the Horizon 2020 Programme of the European Union. We also acknowledge support of the Spanish Ministry of Science and Innovation to the EMBL partnership, the Centro de Excelencia Severo Ochoa and the CERCA Programme from Generalitat de CatalunyaAmerican Chemical Society (ACS)202120212021info:eu-repo/semantics/articleinfo:eu-repo/semantics/publishedVersionapplication/pdfapplication/pdfhttp://hdl.handle.net/10230/47648http://dx.doi.org/10.1021/acs.jproteome.0c00853reponame:Recercat. Dipósit de la Recerca de Catalunyainstname:Varias* (Consorci de Biblioteques Universitáries de Catalunya, Centre de Serveis Científics i Acadèmics de Catalunya)Inglésinfo:eu-repo/grantAgreement/EC/H2020/823839© 2021 Roger Olivella et al. Published by American Chemical Society. Creative commons: https://creativecommons.org/licenses/by-nc-nd/4.0/https://creativecommons.org/licenses/by-nc-nd/4.0/info:eu-repo/semantics/openAccessoai:recercat.cat:10230/476482026-05-29T05:05:01Z
dc.title.none.fl_str_mv QCloud2: an improved cloud-based quality-control system for mass-spectrometry-based proteomics laboratories
title QCloud2: an improved cloud-based quality-control system for mass-spectrometry-based proteomics laboratories
spellingShingle QCloud2: an improved cloud-based quality-control system for mass-spectrometry-based proteomics laboratories
Olivella, Roger
Computació en núvol
Espectrometria de masses
Proteòmica
title_short QCloud2: an improved cloud-based quality-control system for mass-spectrometry-based proteomics laboratories
title_full QCloud2: an improved cloud-based quality-control system for mass-spectrometry-based proteomics laboratories
title_fullStr QCloud2: an improved cloud-based quality-control system for mass-spectrometry-based proteomics laboratories
title_full_unstemmed QCloud2: an improved cloud-based quality-control system for mass-spectrometry-based proteomics laboratories
title_sort QCloud2: an improved cloud-based quality-control system for mass-spectrometry-based proteomics laboratories
dc.creator.none.fl_str_mv Olivella, Roger
Chiva, Cristina
Serret, Marc
Mancera, Daniel
Cozzuto, Luca
Hermoso Pulido, Antonio
Borràs, Eva
Espadas, Guadalupe
Morales Sanfrutos, Julia
Pastor, Olga
Solé, Amanda
Ponomarenko, Julia
Sabidó Aguadé, Eduard, 1981-
author Olivella, Roger
author_facet Olivella, Roger
Chiva, Cristina
Serret, Marc
Mancera, Daniel
Cozzuto, Luca
Hermoso Pulido, Antonio
Borràs, Eva
Espadas, Guadalupe
Morales Sanfrutos, Julia
Pastor, Olga
Solé, Amanda
Ponomarenko, Julia
Sabidó Aguadé, Eduard, 1981-
author_role author
author2 Chiva, Cristina
Serret, Marc
Mancera, Daniel
Cozzuto, Luca
Hermoso Pulido, Antonio
Borràs, Eva
Espadas, Guadalupe
Morales Sanfrutos, Julia
Pastor, Olga
Solé, Amanda
Ponomarenko, Julia
Sabidó Aguadé, Eduard, 1981-
author2_role author
author
author
author
author
author
author
author
author
author
author
author
dc.subject.none.fl_str_mv Computació en núvol
Espectrometria de masses
Proteòmica
topic Computació en núvol
Espectrometria de masses
Proteòmica
description QCloud is a cloud-based system to support proteomics laboratories in daily quality assessment using a user-friendly interface, easy setup, and automated data processing. Since its release, QCloud has facilitated automated quality control for proteomics experiments in many laboratories. QCloud provides a quick and effortless evaluation of instrument performance that helps to overcome many analytical challenges derived from clinical and translational research. Here we present an improved version of the system, QCloud2. This new version includes enhancements in the scalability and reproducibility of the quality-control pipelines, and it features an improved front end for data visualization, user management, and chart annotation. The QCloud2 system also includes programmatic access and a standalone local version.
publishDate 2021
dc.date.none.fl_str_mv 2021
2021
2021
dc.type.none.fl_str_mv info:eu-repo/semantics/article
info:eu-repo/semantics/publishedVersion
format article
status_str publishedVersion
dc.identifier.none.fl_str_mv http://hdl.handle.net/10230/47648
http://dx.doi.org/10.1021/acs.jproteome.0c00853
url http://hdl.handle.net/10230/47648
http://dx.doi.org/10.1021/acs.jproteome.0c00853
dc.language.none.fl_str_mv Inglés
language_invalid_str_mv Inglés
dc.relation.none.fl_str_mv info:eu-repo/grantAgreement/EC/H2020/823839
dc.rights.none.fl_str_mv https://creativecommons.org/licenses/by-nc-nd/4.0/
info:eu-repo/semantics/openAccess
rights_invalid_str_mv https://creativecommons.org/licenses/by-nc-nd/4.0/
eu_rights_str_mv openAccess
dc.format.none.fl_str_mv application/pdf
application/pdf
dc.publisher.none.fl_str_mv American Chemical Society (ACS)
publisher.none.fl_str_mv American Chemical Society (ACS)
dc.source.none.fl_str_mv reponame:Recercat. Dipósit de la Recerca de Catalunya
instname:Varias* (Consorci de Biblioteques Universitáries de Catalunya, Centre de Serveis Científics i Acadèmics de Catalunya)
instname_str Varias* (Consorci de Biblioteques Universitáries de Catalunya, Centre de Serveis Científics i Acadèmics de Catalunya)
reponame_str Recercat. Dipósit de la Recerca de Catalunya
collection Recercat. Dipósit de la Recerca de Catalunya
repository.name.fl_str_mv
repository.mail.fl_str_mv
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