Genome sequence reveals that Pseudomonas fluorescens F113 possesses a large and diverse array of systems for rhizosphere function and host interaction
Redondo-Nieto et al.: Genome sequence reveals that Pseudomonas fluorescens F113 possesses a large and diverse array of systems for rhizosphere function and host interaction. BMC Genomics 2013 14:54.The electronic version of this article is the complete one and can be found online at http://www.biome...
| Autores: | , , , , , , , , , , , , , |
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| Formato: | artículo |
| Fecha de publicación: | 2013 |
| País: | España |
| Recursos: | Universidad Autónoma de Madrid |
| Repositorio: | Biblos-e Archivo. Repositorio Institucional de la UAM |
| Idioma: | inglés |
| OAI Identifier: | oai:repositorio.uam.es:10486/662118 |
| Acesso em linha: | http://hdl.handle.net/10486/662118 https://dx.doi.org/10.1186/1471-2164-14-54 |
| Access Level: | acceso abierto |
| Palavra-chave: | Bacterial genome Bacterial strain Gene sequence Genetic code Host pathogen interaction Nonhuman Pseudomonas Pseudomonas brassicacearum Rhizosphere Bacterial Proteins Biología y Biomedicina / Biología |
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| dc.title.none.fl_str_mv |
Genome sequence reveals that Pseudomonas fluorescens F113 possesses a large and diverse array of systems for rhizosphere function and host interaction |
| title |
Genome sequence reveals that Pseudomonas fluorescens F113 possesses a large and diverse array of systems for rhizosphere function and host interaction |
| spellingShingle |
Genome sequence reveals that Pseudomonas fluorescens F113 possesses a large and diverse array of systems for rhizosphere function and host interaction Redondo Nieto, Miguel Bacterial genome Bacterial strain Gene sequence Genetic code Host pathogen interaction Nonhuman Pseudomonas Pseudomonas brassicacearum Rhizosphere Bacterial Proteins Biología y Biomedicina / Biología |
| title_short |
Genome sequence reveals that Pseudomonas fluorescens F113 possesses a large and diverse array of systems for rhizosphere function and host interaction |
| title_full |
Genome sequence reveals that Pseudomonas fluorescens F113 possesses a large and diverse array of systems for rhizosphere function and host interaction |
| title_fullStr |
Genome sequence reveals that Pseudomonas fluorescens F113 possesses a large and diverse array of systems for rhizosphere function and host interaction |
| title_full_unstemmed |
Genome sequence reveals that Pseudomonas fluorescens F113 possesses a large and diverse array of systems for rhizosphere function and host interaction |
| title_sort |
Genome sequence reveals that Pseudomonas fluorescens F113 possesses a large and diverse array of systems for rhizosphere function and host interaction |
| dc.creator.none.fl_str_mv |
Redondo Nieto, Miguel Barret, Matthieu Morrissey, John Germaine, Kieran Martínez-Granero, Francisco Barahona, Emma Navazo, Ana Sánchez-Contreras, María Moynihan, Jennifer A. Muriel, Candela Dowling, David O'Gara, Fergal Martín Basanta, Marta Rivilla Palma, Rafael |
| author |
Redondo Nieto, Miguel |
| author_facet |
Redondo Nieto, Miguel Barret, Matthieu Morrissey, John Germaine, Kieran Martínez-Granero, Francisco Barahona, Emma Navazo, Ana Sánchez-Contreras, María Moynihan, Jennifer A. Muriel, Candela Dowling, David O'Gara, Fergal Martín Basanta, Marta Rivilla Palma, Rafael |
| author_role |
author |
| author2 |
Barret, Matthieu Morrissey, John Germaine, Kieran Martínez-Granero, Francisco Barahona, Emma Navazo, Ana Sánchez-Contreras, María Moynihan, Jennifer A. Muriel, Candela Dowling, David O'Gara, Fergal Martín Basanta, Marta Rivilla Palma, Rafael |
| author2_role |
author author author author author author author author author author author author author |
| dc.contributor.none.fl_str_mv |
Departamento de Biología Facultad de Ciencias |
| dc.subject.none.fl_str_mv |
Bacterial genome Bacterial strain Gene sequence Genetic code Host pathogen interaction Nonhuman Pseudomonas Pseudomonas brassicacearum Rhizosphere Bacterial Proteins Biología y Biomedicina / Biología |
| topic |
Bacterial genome Bacterial strain Gene sequence Genetic code Host pathogen interaction Nonhuman Pseudomonas Pseudomonas brassicacearum Rhizosphere Bacterial Proteins Biología y Biomedicina / Biología |
| description |
Redondo-Nieto et al.: Genome sequence reveals that Pseudomonas fluorescens F113 possesses a large and diverse array of systems for rhizosphere function and host interaction. BMC Genomics 2013 14:54.The electronic version of this article is the complete one and can be found online at http://www.biomedcentral.com/1471-2164/14/54 |
| publishDate |
2013 |
| dc.date.none.fl_str_mv |
2013 2013-01-25 |
| dc.type.none.fl_str_mv |
research article http://purl.org/coar/resource_type/c_2df8fbb1 VoR http://purl.org/coar/version/c_970fb48d4fbd8a85 |
| dc.type.openaire.fl_str_mv |
info:eu-repo/semantics/article |
| format |
article |
| dc.identifier.none.fl_str_mv |
http://hdl.handle.net/10486/662118 https://dx.doi.org/10.1186/1471-2164-14-54 |
| url |
http://hdl.handle.net/10486/662118 https://dx.doi.org/10.1186/1471-2164-14-54 |
| dc.language.none.fl_str_mv |
Inglés eng |
| language_invalid_str_mv |
Inglés |
| language |
eng |
| dc.rights.none.fl_str_mv |
open access http://purl.org/coar/access_right/c_abf2 |
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info:eu-repo/semantics/openAccess |
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open access http://purl.org/coar/access_right/c_abf2 |
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openAccess |
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application/pdf |
| dc.publisher.none.fl_str_mv |
Redondo-Nieto et al. BioMed Central Ltd. |
| publisher.none.fl_str_mv |
Redondo-Nieto et al. BioMed Central Ltd. |
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reponame:Biblos-e Archivo. Repositorio Institucional de la UAM instname:Universidad Autónoma de Madrid |
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Universidad Autónoma de Madrid |
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Biblos-e Archivo. Repositorio Institucional de la UAM |
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Biblos-e Archivo. Repositorio Institucional de la UAM |
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1869404595457884160 |
| spelling |
Genome sequence reveals that Pseudomonas fluorescens F113 possesses a large and diverse array of systems for rhizosphere function and host interactionRedondo Nieto, MiguelBarret, MatthieuMorrissey, JohnGermaine, KieranMartínez-Granero, FranciscoBarahona, EmmaNavazo, AnaSánchez-Contreras, MaríaMoynihan, Jennifer A.Muriel, CandelaDowling, DavidO'Gara, FergalMartín Basanta, MartaRivilla Palma, RafaelBacterial genomeBacterial strainGene sequenceGenetic codeHost pathogen interactionNonhumanPseudomonasPseudomonas brassicacearumRhizosphereBacterial ProteinsBiología y Biomedicina / BiologíaRedondo-Nieto et al.: Genome sequence reveals that Pseudomonas fluorescens F113 possesses a large and diverse array of systems for rhizosphere function and host interaction. BMC Genomics 2013 14:54.The electronic version of this article is the complete one and can be found online at http://www.biomedcentral.com/1471-2164/14/54Background: Pseudomonas fluorescens F113 is a plant growth-promoting rhizobacterium (PGPR) isolated from the sugar-beet rhizosphere. This bacterium has been extensively studied as a model strain for genetic regulation of secondary metabolite production in P. fluorescens, as a candidate biocontrol agent against phytopathogens, and as a heterologous host for expression of genes with biotechnological application. The F113 genome sequence and annotation has been recently reported.Results: Comparative analysis of 50 genome sequences of strains belonging to the P. fluorescens group has revealed the existence of five distinct subgroups. F113 belongs to subgroup I, which is mostly composed of strains classified as P. brassicacearum. The core genome of these five strains is highly conserved and represents approximately 76% of the protein-coding genes in any given genome. Despite this strong conservation, F113 also contains a large number of unique protein-coding genes that encode traits potentially involved in the rhizocompetence of this strain. These features include protein coding genes required for denitrification, diterpenoids catabolism, motility and chemotaxis, protein secretion and production of antimicrobial compounds and insect toxins.Conclusions: The genome of P. fluorescens F113 is composed of numerous protein-coding genes, not usually found together in previously sequenced genomes, which are potentially decisive during the colonisation of the rhizosphere and/or interaction with other soil organisms. This includes genes encoding proteins involved in the production of a second flagellar apparatus, the use of abietic acid as a growth substrate, the complete denitrification pathway, the possible production of a macrolide antibiotic and the assembly of multiple protein secretion systemsThis research was supported in parts by grants awarded to FOG by the Science Foundation of Ireland (07IN.1/B948, 08/RFP/GEN1295, 08/RFP/GEN1319, SFI09/RFP/BMT2350); the Department of Agriculture, Fisheries and Food (RSF grants 06–321 and 06–377; FIRM grants 06RDC459 06RDC506 and 08RDC629); the European Commission (MTKD-CT-2006-042062, Marie Curie TOK:TRAMWAYS, EU256596, MicroB3-287589-OCEAN2012, MACUMBA-CP-TP 311975; PharmaSea-CP-TP 312184); IRCSET (05/EDIV/FP107/INTERPAM, EMBARK), the Marine Institute Beaufort award (C&CRA 2007/082), the Environmental Protection Agency (EPA 2006-PhD-S-21, EPA 2008-PhD-S-2) and the HRB (RP/2006/271, RP/2007/290, HRA/2009/146). The Lab of KG & DD was in part funded by an SFI Tida award and the Department of Education TSR III Agribiotics project.Redondo-Nieto et al.BioMed Central Ltd.Departamento de BiologíaFacultad de Ciencias20132013-01-25research articlehttp://purl.org/coar/resource_type/c_2df8fbb1VoRhttp://purl.org/coar/version/c_970fb48d4fbd8a85info:eu-repo/semantics/articleapplication/pdfhttp://hdl.handle.net/10486/662118https://dx.doi.org/10.1186/1471-2164-14-54reponame:Biblos-e Archivo. Repositorio Institucional de la UAMinstname:Universidad Autónoma de MadridInglésengopen accesshttp://purl.org/coar/access_right/c_abf2info:eu-repo/semantics/openAccessoai:repositorio.uam.es:10486/6621182026-06-23T12:46:27Z |
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15.300719 |