A Metagenomic and Amplicon Sequencing Combined Approach Reveals the Best Primers to Study Marine Aerobic Anoxygenic Phototrophs
12 pages, 3 figures, 1 table, supplementary information https://doi.org/10.1007/s00248-023-02220-y.-- Data Availability: Most of the analyses were performed in R version 4.2.0 (R Core Team 2022), and code is available in the following repository: https://gitlab.com/crgazulla/analysing-pufm-primers-f...
| Autores: | , , , , , |
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| Tipo de recurso: | artículo |
| Estado: | Versión publicada |
| Fecha de publicación: | 2023 |
| País: | España |
| Institución: | Consejo Superior de Investigaciones Científicas (CSIC) |
| Repositorio: | DIGITAL.CSIC. Repositorio Institucional del CSIC |
| OAI Identifier: | oai:digital.csic.es:10261/337803 |
| Acceso en línea: | http://hdl.handle.net/10261/337803 |
| Access Level: | acceso abierto |
| Palabra clave: | pufM gene Primer evaluation Metagenomics Amplicon sequencing AAP bacteria http://metadata.un.org/sdg/14 Conserve and sustainably use the oceans, seas and marine resources for sustainable development |
| Sumario: | 12 pages, 3 figures, 1 table, supplementary information https://doi.org/10.1007/s00248-023-02220-y.-- Data Availability: Most of the analyses were performed in R version 4.2.0 (R Core Team 2022), and code is available in the following repository: https://gitlab.com/crgazulla/analysing-pufm-primers-for-marine-aap-studies. The pufM database is available in the Supplementary Material. Amplicon sequences have been deposited in the NCBI Sequence Read Archive (SRA) under BioProject ID PRJNA919028. Sequences from the BBMO metagenomic dataset were published in Auladell et al., [28], and those from the Malaspina Expedition dataset are deposited under BioProject ID PRJEB52452 |
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