Growth rates of marine prokaryotes are extremely diverse, even among closely related taxa

14 pages, 7 figures, 1 table. © The Author(s) 2024. Published by Oxford University Press on behalf of the International Society for Microbial Ecology. This is an Open Access article distributed under the terms of the Creative Commons Attribution License (https://creativecommons.org/licenses/by/4.0/)...

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Autores: Deulofeu, Ona, Sebastián, Marta, Auladell Martin, Adria, Ferrera, Isabel, Sánchez, Olga, Gasol, Josep M.
Tipo de recurso: artículo
Estado:Versión publicada
Fecha de publicación:2024
País:España
Institución:Consejo Superior de Investigaciones Científicas (CSIC)
Repositorio:DIGITAL.CSIC. Repositorio Institucional del CSIC
OAI Identifier:oai:digital.csic.es:10261/355892
Acceso en línea:http://hdl.handle.net/10261/355892
Access Level:acceso abierto
Palabra clave:http://metadata.un.org/sdg/14
Conserve and sustainably use the oceans, seas and marine resources for sustainable development
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dc.title.none.fl_str_mv Growth rates of marine prokaryotes are extremely diverse, even among closely related taxa
title Growth rates of marine prokaryotes are extremely diverse, even among closely related taxa
spellingShingle Growth rates of marine prokaryotes are extremely diverse, even among closely related taxa
Deulofeu, Ona
http://metadata.un.org/sdg/14
Conserve and sustainably use the oceans, seas and marine resources for sustainable development
title_short Growth rates of marine prokaryotes are extremely diverse, even among closely related taxa
title_full Growth rates of marine prokaryotes are extremely diverse, even among closely related taxa
title_fullStr Growth rates of marine prokaryotes are extremely diverse, even among closely related taxa
title_full_unstemmed Growth rates of marine prokaryotes are extremely diverse, even among closely related taxa
title_sort Growth rates of marine prokaryotes are extremely diverse, even among closely related taxa
dc.creator.none.fl_str_mv Deulofeu, Ona
Sebastián, Marta
Auladell Martin, Adria
Ferrera, Isabel
Sánchez, Olga
Gasol, Josep M.
author Deulofeu, Ona
author_facet Deulofeu, Ona
Sebastián, Marta
Auladell Martin, Adria
Ferrera, Isabel
Sánchez, Olga
Gasol, Josep M.
author_role author
author2 Sebastián, Marta
Auladell Martin, Adria
Ferrera, Isabel
Sánchez, Olga
Gasol, Josep M.
author2_role author
author
author
author
author
dc.contributor.none.fl_str_mv Ministerio de Economía y Competitividad (España)
Ministerio de Ciencia, Innovación y Universidades (España)
Agencia Estatal de Investigación (España)
Consejo Superior de Investigaciones Científicas [https://ror.org/02gfc7t72]
dc.subject.none.fl_str_mv http://metadata.un.org/sdg/14
Conserve and sustainably use the oceans, seas and marine resources for sustainable development
topic http://metadata.un.org/sdg/14
Conserve and sustainably use the oceans, seas and marine resources for sustainable development
description 14 pages, 7 figures, 1 table. © The Author(s) 2024. Published by Oxford University Press on behalf of the International Society for Microbial Ecology. This is an Open Access article distributed under the terms of the Creative Commons Attribution License (https://creativecommons.org/licenses/by/4.0/), which permits unrestricted reuse, distribution, and reproduction in any medium, provided the original work is properly cited.
publishDate 2024
dc.date.none.fl_str_mv 2024
2024
2024
dc.type.none.fl_str_mv info:eu-repo/semantics/article
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info:eu-repo/semantics/publishedVersion
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dc.identifier.none.fl_str_mv http://hdl.handle.net/10261/355892
url http://hdl.handle.net/10261/355892
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info:eu-repo/grantAgreement/AEI/Plan Estatal de Investigación Científica y Técnica y de Innovación 2017-2020/RTI2018-101025-B-I00
Data Availability Statement: Sequence data have been deposited in ENA under accession number PRJEB60085. The R-scripts used to calculate growth rates, generate figures and statistical analyses are available at: https://github.com/onadeulofeu/Single-ASV-based_prokaryotes_growth_rates.
https://doi.org/10.1093/ismeco/ycae066
Sí
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eu_rights_str_mv openAccess
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dc.publisher.none.fl_str_mv Oxford University Press
International Society for Microbial Ecology
publisher.none.fl_str_mv Oxford University Press
International Society for Microbial Ecology
dc.source.none.fl_str_mv reponame:DIGITAL.CSIC. Repositorio Institucional del CSIC
instname:Consejo Superior de Investigaciones Científicas (CSIC)
instname_str Consejo Superior de Investigaciones Científicas (CSIC)
reponame_str DIGITAL.CSIC. Repositorio Institucional del CSIC
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spelling Growth rates of marine prokaryotes are extremely diverse, even among closely related taxaDeulofeu, OnaSebastián, MartaAuladell Martin, AdriaFerrera, IsabelSánchez, OlgaGasol, Josep M.http://metadata.un.org/sdg/14Conserve and sustainably use the oceans, seas and marine resources for sustainable development14 pages, 7 figures, 1 table. © The Author(s) 2024. Published by Oxford University Press on behalf of the International Society for Microbial Ecology. This is an Open Access article distributed under the terms of the Creative Commons Attribution License (https://creativecommons.org/licenses/by/4.0/), which permits unrestricted reuse, distribution, and reproduction in any medium, provided the original work is properly cited.Marine prokaryotes play crucial roles in ocean biogeochemical cycles, being their contribution strongly influenced by their growth rates. Hence, elucidating the variability and phylogenetic imprint of marine prokaryotes' growth rates are crucial for better determining the role of individual taxa in biogeochemical cycles. Here, we estimated prokaryotic growth rates at high phylogenetic resolution in manipulation experiments using water from the northwestern Mediterranean Sea. Experiments were run in the four seasons with different treatments that reduced growth limiting factors: predators, nutrient availability, viruses, and light. Single-amplicon sequence variants (ASVs)-based growth rates were calculated from changes in estimated absolute abundances using total prokaryotic abundance and the proportion of each individual ASV. The trends obtained for growth rates in the different experiments were consistent with other estimates based on total cell-counts, CARD-FISH subcommunity cell-counts or metagenomic-OTUs. Our calculations unveil a broad range of growth rates [0.3-10 d-1] with significant variability even within closely related ASVs. Likewise, the impact of growth limiting factors changed over the year for individual ASVs. High numbers of responsive ASVs were shared between winter and spring seasons, as well as throughout the year in the treatments with reduced nutrient limitation and viral pressure. The most responsive ASVs were rare in the in situ communities, comprising a large pool of taxa with the potential to rapidly respond to environmental changes. Essentially, our results highlight the lack of phylogenetic coherence in the range of growth rates observed, and differential responses to the various limiting factors, even for closely related taxaThis research was supported by grants REMEI (CTM2015-70340-R) and MIAU (RTI2018-101025-B-100) funded by the Spanish Ministry of Science and Innovation. We acknowledge the ‘Severo Ochoa Centre of Excellence’ accreditation (CEX2019-000928-S). Adrià Auladell and Ona Deulofeu-Capo were supported by Spanish FPI grantsWith funding from the Spanish government through the ‘Severo Ochoa Centre of Excellence’ accreditation (CEX2019-000928-S).Peer reviewedOxford University PressInternational Society for Microbial EcologyMinisterio de Economía y Competitividad (España)Ministerio de Ciencia, Innovación y Universidades (España)Agencia Estatal de Investigación (España)Consejo Superior de Investigaciones Científicas [https://ror.org/02gfc7t72]202420242024info:eu-repo/semantics/articlehttp://purl.org/coar/resource_type/c_6501Publisher's versioninfo:eu-repo/semantics/publishedVersionapplication/pdfhttp://hdl.handle.net/10261/355892reponame:DIGITAL.CSIC. Repositorio Institucional del CSICinstname:Consejo Superior de Investigaciones Científicas (CSIC)Inglés#PLACEHOLDER_PARENT_METADATA_VALUE##PLACEHOLDER_PARENT_METADATA_VALUE#info:eu-repo/grantAgreement/MINECO//CTM2015-70340-Rinfo:eu-repo/grantAgreement/AEI/Plan Estatal de Investigación Científica y Técnica y de Innovación 2017-2020/RTI2018-101025-B-I00Data Availability Statement: Sequence data have been deposited in ENA under accession number PRJEB60085. The R-scripts used to calculate growth rates, generate figures and statistical analyses are available at: https://github.com/onadeulofeu/Single-ASV-based_prokaryotes_growth_rates.https://doi.org/10.1093/ismeco/ycae066Síinfo:eu-repo/semantics/openAccessoai:digital.csic.es:10261/3558922026-05-22T06:33:51Z
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