Geographical and temporal distribution of SARS-CoV-2 clades in the WHO European Region, January to June 2020

We show the distribution of severe acute respiratory syndrome coronavirus-2 (SARS-CoV-2) genetic clades over time and between countries and outline potential genomic surveillance objectives. We applied three genomic nomenclature systems to all sequence data from the World Health Organization Europea...

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Detalles Bibliográficos
Autores: Alm, Erik, Broberg, Eeva K, Connor, Thomas, Hodcroft, Emma B, Komissarov, Andrey B, Maurer-Stroh, Sebastian, Melidou, Angeliki, Neher, Richard A, O'Toole, Áine, Pereyaslov, Dmitriy, WHO European Region sequencing laboratories, GISAID EpiCoV group, Casas Flecha, Inmaculada
Tipo de recurso: artículo
Fecha de publicación:2020
País:España
Institución:Instituto de Salud Carlos III (ISCIII)
Repositorio:Repisalud
Idioma:inglés
OAI Identifier:oai:repisalud.isciii.es:20.500.12105/15510
Acceso en línea:http://hdl.handle.net/20.500.12105/15510
Access Level:acceso abierto
Palabra clave:Pandemics
Base Sequence
Betacoronavirus
COVID-19
Coronavirus
Coronavirus Infections
Europe
Genome, Viral
Humans
Phylogeography
Pneumonia, Viral
RNA, Viral
RNA-Dependent RNA Polymerase
SARS-CoV-2
Severe Acute Respiratory Syndrome
Spatio-Temporal Analysis
World Health Organization
Descripción
Sumario:We show the distribution of severe acute respiratory syndrome coronavirus-2 (SARS-CoV-2) genetic clades over time and between countries and outline potential genomic surveillance objectives. We applied three genomic nomenclature systems to all sequence data from the World Health Organization European Region available until 10 July 2020. We highlight the importance of real-time sequencing and data dissemination in a pandemic situation, compare the nomenclatures and lay a foundation for future European genomic surveillance of SARS-CoV-2.

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