OntoCR: A CEN/ISO-13606 clinical repository based on ontologies

Objective: To design a new semantically interoperable clinical repository, based on ontologies, conforming to CEN/ISO 13606 standard. Materials and Methods: The approach followed is to extend OntoCRF, a framework for the development of clinical repositories based on ontologies. The meta-model of Ont...

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Detalles Bibliográficos
Autores: Lozano Rubí, Raimundo, Muñoz Carrero, Adolfo, Serrano Balazote, Pablo, Pastor Durán, Xavier
Tipo de recurso: artículo
Estado:Versión aceptada para publicación
Fecha de publicación:2016
País:España
Institución:Universidad de Barcelona
Repositorio:Dipòsit Digital de la UB
OAI Identifier:oai:diposit.ub.edu:2445/115947
Acceso en línea:https://hdl.handle.net/2445/115947
Access Level:acceso abierto
Palabra clave:Ontologies (Informàtica)
Històries clíniques
Tecnologia de la informació
Informàtica mèdica
Ontologies (Information retrieval)
Medical records
Information technology
Medical informatics
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spelling OntoCR: A CEN/ISO-13606 clinical repository based on ontologiesLozano Rubí, RaimundoMuñoz Carrero, AdolfoSerrano Balazote, PabloPastor Durán, XavierOntologies (Informàtica)Històries clíniquesTecnologia de la informacióInformàtica mèdicaOntologies (Information retrieval)Medical recordsInformation technologyMedical informaticsObjective: To design a new semantically interoperable clinical repository, based on ontologies, conforming to CEN/ISO 13606 standard. Materials and Methods: The approach followed is to extend OntoCRF, a framework for the development of clinical repositories based on ontologies. The meta-model of OntoCRF has been extended by incorporating an OWL model integrating CEN/ISO 13606, ISO 21090 and SNOMED CT structure. Results: This approach has demonstrated a complete evaluation cycle involving the creation of the meta-model in OWL format, the creation of a simple test application, and the communication of standardized extracts to another organization. Discussion: Using a CEN/ISO 13606 based system, an indefinite number of archetypes can be merged (and reused) to build new applications. Our approach, based on the use of ontologies, maintains data storage independent of content specification. With this approach, relational technology can be used for storage, maintaining extensibility capabilities. Conclusions: The present work demonstrates that it is possible to build a native CEN/ISO 13606 repository for the storage of clinical data. We have demonstrated semantic interoperability of clinical information using CEN/ISO 13606 extracts.Elsevier2016info:eu-repo/semantics/articleinfo:eu-repo/semantics/acceptedVersionapplication/pdfhttps://hdl.handle.net/2445/115947Articles publicats en revistes (Fonaments Clínics)reponame:Dipòsit Digital de la UBinstname:Universidad de BarcelonaInglésVersió postprint del document publicat a: https://doi.org/10.1016/j.jbi.2016.02.007Journal of Biomedical Informatics, 2016, vol. 60, p. 224-233https://doi.org/10.1016/j.jbi.2016.02.007cc-by-nc-nd (c) Elsevier, 2016http://creativecommons.org/licenses/by-nc-nd/3.0/esinfo:eu-repo/semantics/openAccessoai:diposit.ub.edu:2445/1159472026-05-27T06:46:51Z
dc.title.none.fl_str_mv OntoCR: A CEN/ISO-13606 clinical repository based on ontologies
title OntoCR: A CEN/ISO-13606 clinical repository based on ontologies
spellingShingle OntoCR: A CEN/ISO-13606 clinical repository based on ontologies
Lozano Rubí, Raimundo
Ontologies (Informàtica)
Històries clíniques
Tecnologia de la informació
Informàtica mèdica
Ontologies (Information retrieval)
Medical records
Information technology
Medical informatics
title_short OntoCR: A CEN/ISO-13606 clinical repository based on ontologies
title_full OntoCR: A CEN/ISO-13606 clinical repository based on ontologies
title_fullStr OntoCR: A CEN/ISO-13606 clinical repository based on ontologies
title_full_unstemmed OntoCR: A CEN/ISO-13606 clinical repository based on ontologies
title_sort OntoCR: A CEN/ISO-13606 clinical repository based on ontologies
dc.creator.none.fl_str_mv Lozano Rubí, Raimundo
Muñoz Carrero, Adolfo
Serrano Balazote, Pablo
Pastor Durán, Xavier
author Lozano Rubí, Raimundo
author_facet Lozano Rubí, Raimundo
Muñoz Carrero, Adolfo
Serrano Balazote, Pablo
Pastor Durán, Xavier
author_role author
author2 Muñoz Carrero, Adolfo
Serrano Balazote, Pablo
Pastor Durán, Xavier
author2_role author
author
author
dc.subject.none.fl_str_mv Ontologies (Informàtica)
Històries clíniques
Tecnologia de la informació
Informàtica mèdica
Ontologies (Information retrieval)
Medical records
Information technology
Medical informatics
topic Ontologies (Informàtica)
Històries clíniques
Tecnologia de la informació
Informàtica mèdica
Ontologies (Information retrieval)
Medical records
Information technology
Medical informatics
description Objective: To design a new semantically interoperable clinical repository, based on ontologies, conforming to CEN/ISO 13606 standard. Materials and Methods: The approach followed is to extend OntoCRF, a framework for the development of clinical repositories based on ontologies. The meta-model of OntoCRF has been extended by incorporating an OWL model integrating CEN/ISO 13606, ISO 21090 and SNOMED CT structure. Results: This approach has demonstrated a complete evaluation cycle involving the creation of the meta-model in OWL format, the creation of a simple test application, and the communication of standardized extracts to another organization. Discussion: Using a CEN/ISO 13606 based system, an indefinite number of archetypes can be merged (and reused) to build new applications. Our approach, based on the use of ontologies, maintains data storage independent of content specification. With this approach, relational technology can be used for storage, maintaining extensibility capabilities. Conclusions: The present work demonstrates that it is possible to build a native CEN/ISO 13606 repository for the storage of clinical data. We have demonstrated semantic interoperability of clinical information using CEN/ISO 13606 extracts.
publishDate 2016
dc.date.none.fl_str_mv 2016
dc.type.none.fl_str_mv info:eu-repo/semantics/article
info:eu-repo/semantics/acceptedVersion
format article
status_str acceptedVersion
dc.identifier.none.fl_str_mv https://hdl.handle.net/2445/115947
url https://hdl.handle.net/2445/115947
dc.language.none.fl_str_mv Inglés
language_invalid_str_mv Inglés
dc.relation.none.fl_str_mv Versió postprint del document publicat a: https://doi.org/10.1016/j.jbi.2016.02.007
Journal of Biomedical Informatics, 2016, vol. 60, p. 224-233
https://doi.org/10.1016/j.jbi.2016.02.007
dc.rights.none.fl_str_mv cc-by-nc-nd (c) Elsevier, 2016
http://creativecommons.org/licenses/by-nc-nd/3.0/es
info:eu-repo/semantics/openAccess
rights_invalid_str_mv cc-by-nc-nd (c) Elsevier, 2016
http://creativecommons.org/licenses/by-nc-nd/3.0/es
eu_rights_str_mv openAccess
dc.format.none.fl_str_mv application/pdf
dc.publisher.none.fl_str_mv Elsevier
publisher.none.fl_str_mv Elsevier
dc.source.none.fl_str_mv Articles publicats en revistes (Fonaments Clínics)
reponame:Dipòsit Digital de la UB
instname:Universidad de Barcelona
instname_str Universidad de Barcelona
reponame_str Dipòsit Digital de la UB
collection Dipòsit Digital de la UB
repository.name.fl_str_mv
repository.mail.fl_str_mv
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