Data from: A novel locus on chromosome 1 underlies the evolution of a melanic plumage polymorphism in a wild songbird

Data for microsatellites, spectrophotometry and melanins dosage This file contains 1) microsatellites data in GENPOP format, 2) morphometric data for birds included in the pedigree analysis, 3) Spectrophotometry measurements and 4) Results from the dosage of melanins for 12 individuals. Localities c...

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Detalles Bibliográficos
Autores: Bourgeois, Yann X. C., Delahaie, Boris, Gautier, Mathieu, Lhuillier, Emeline, Malé, Pierre-Jean G., Bertrand, Joris A. M., Cornuault, Josselin, Wakamatsu, Kazumasa, Bouchez, Olivier, Mould, Claire, Bruxaux, Jade, Holota, Hélène, Milá, Borja, Thébaud, Christophe
Tipo de recurso: conjunto de datos
Fecha de publicación:2017
País:España
Institución:Consejo Superior de Investigaciones Científicas (CSIC)
Repositorio:DIGITAL.CSIC. Repositorio Institucional del CSIC
OAI Identifier:oai:digital.csic.es:10261/281390
Acceso en línea:http://hdl.handle.net/10261/281390
http://datadryad.org/stash/dataset/doi:10.5061/dryad.1q9g7
Access Level:acceso abierto
Palabra clave:Zosterops borbonicus
chromosome 1
Selective sweep
Melanism
Polymorphism
Zosterops
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repository_id_str
spelling Data from: A novel locus on chromosome 1 underlies the evolution of a melanic plumage polymorphism in a wild songbirdBourgeois, Yann X. C.Delahaie, BorisGautier, MathieuLhuillier, EmelineMalé, Pierre-Jean G.Bertrand, Joris A. M.Cornuault, JosselinWakamatsu, KazumasaBouchez, OlivierMould, ClaireBruxaux, JadeHolota, HélèneMilá, BorjaThébaud, ChristopheZosterops borbonicuschromosome 1Selective sweepMelanismPolymorphismZosteropsData for microsatellites, spectrophotometry and melanins dosage This file contains 1) microsatellites data in GENPOP format, 2) morphometric data for birds included in the pedigree analysis, 3) Spectrophotometry measurements and 4) Results from the dosage of melanins for 12 individuals. Localities coordinates are also provided. All_data_microsats_spectro_melanindosage.xlsx Unfiltered VCF file for 42 individuals SNPs calls for individual GBS data from the same three localities as in Pooled RAD-seq. Colors and localities for each individuals are provided in a separate excel file. Highlands_dataset.recode.vcf Information about individuals included in the GBS VCF file Morph and localities for each individual included in the GBS study. Localities_Morphs_individuals_VCF.xlsxUnderstanding the mechanisms responsible for phenotypic diversification within and among species ultimately rests with linking naturally occurring mutations to functionally and ecologically significant traits. Colour polymorphisms are of great interest in this context because discrete colour patterns within a population are often controlled by just a few genes in a common environment. We investigated how and why phenotypic diversity arose and persists in the Zosterops borbonicus white-eye of Reunion (Mascarene archipelago), a colour polymorphic songbird in which all highland populations contain individuals belonging to either a brown or a grey plumage morph. Using extensive phenotypic and genomic data, we demonstrate that this melanin-based colour polymorphism is controlled by a single locus on chromosome 1 with two large-effect alleles, which was not previously described as affecting hair or feather colour. Differences between colour morphs appear to rely upon complex cis-regulatory variation that either prevents the synthesis of pheomelanin in grey feathers, or increases its production in brown ones. We used coalescent analyses to show that, from a ‘brown’ ancestral population, the dominant ‘grey’ allele spread quickly once it arose from a new mutation. Since colour morphs are always found in mixture, this implies that the selected allele does not go to fixation, but instead reaches an intermediate frequency, as would be expected under balancing selection.Peer reviewedDryadConsejo Superior de Investigaciones Científicas [https://ror.org/02gfc7t72]202220222017info:eu-repo/semantics/datasethttp://purl.org/coar/resource_type/c_ddb1vcf; xlsxhttp://hdl.handle.net/10261/281390http://datadryad.org/stash/dataset/doi:10.5061/dryad.1q9g7reponame:DIGITAL.CSIC. Repositorio Institucional del CSICinstname:Consejo Superior de Investigaciones Científicas (CSIC)InglésBourgeois, Yann X. C.; Delahaie, Boris; Gautier, Mathieu; Lhuillier, Emeline; Malé, Pierre-Jean G.; Bertrand, Joris A. M.; Cornuault, Josselin; Wakamatsu, Kazumasa; Bouchez, Olivier; Mould, Claire; Bruxaux, Jade; Holota, Hélène; Milá, Borja; Thébaud, Christophe (2017): A novel locus on chromosome 1 underlies the evolution of a melanic plumage polymorphism in a wild songbird ; https://doi.org/10.1098/rsos.160805. http://hdl.handle.net/10261/152349https://doi.org/10.5061/dryad.1q9g7Síinfo:eu-repo/semantics/openAccessoai:digital.csic.es:10261/2813902026-05-22T06:33:51Z
dc.title.none.fl_str_mv Data from: A novel locus on chromosome 1 underlies the evolution of a melanic plumage polymorphism in a wild songbird
title Data from: A novel locus on chromosome 1 underlies the evolution of a melanic plumage polymorphism in a wild songbird
spellingShingle Data from: A novel locus on chromosome 1 underlies the evolution of a melanic plumage polymorphism in a wild songbird
Bourgeois, Yann X. C.
Zosterops borbonicus
chromosome 1
Selective sweep
Melanism
Polymorphism
Zosterops
title_short Data from: A novel locus on chromosome 1 underlies the evolution of a melanic plumage polymorphism in a wild songbird
title_full Data from: A novel locus on chromosome 1 underlies the evolution of a melanic plumage polymorphism in a wild songbird
title_fullStr Data from: A novel locus on chromosome 1 underlies the evolution of a melanic plumage polymorphism in a wild songbird
title_full_unstemmed Data from: A novel locus on chromosome 1 underlies the evolution of a melanic plumage polymorphism in a wild songbird
title_sort Data from: A novel locus on chromosome 1 underlies the evolution of a melanic plumage polymorphism in a wild songbird
dc.creator.none.fl_str_mv Bourgeois, Yann X. C.
Delahaie, Boris
Gautier, Mathieu
Lhuillier, Emeline
Malé, Pierre-Jean G.
Bertrand, Joris A. M.
Cornuault, Josselin
Wakamatsu, Kazumasa
Bouchez, Olivier
Mould, Claire
Bruxaux, Jade
Holota, Hélène
Milá, Borja
Thébaud, Christophe
author Bourgeois, Yann X. C.
author_facet Bourgeois, Yann X. C.
Delahaie, Boris
Gautier, Mathieu
Lhuillier, Emeline
Malé, Pierre-Jean G.
Bertrand, Joris A. M.
Cornuault, Josselin
Wakamatsu, Kazumasa
Bouchez, Olivier
Mould, Claire
Bruxaux, Jade
Holota, Hélène
Milá, Borja
Thébaud, Christophe
author_role author
author2 Delahaie, Boris
Gautier, Mathieu
Lhuillier, Emeline
Malé, Pierre-Jean G.
Bertrand, Joris A. M.
Cornuault, Josselin
Wakamatsu, Kazumasa
Bouchez, Olivier
Mould, Claire
Bruxaux, Jade
Holota, Hélène
Milá, Borja
Thébaud, Christophe
author2_role author
author
author
author
author
author
author
author
author
author
author
author
author
dc.contributor.none.fl_str_mv Consejo Superior de Investigaciones Científicas [https://ror.org/02gfc7t72]
dc.subject.none.fl_str_mv Zosterops borbonicus
chromosome 1
Selective sweep
Melanism
Polymorphism
Zosterops
topic Zosterops borbonicus
chromosome 1
Selective sweep
Melanism
Polymorphism
Zosterops
description Data for microsatellites, spectrophotometry and melanins dosage This file contains 1) microsatellites data in GENPOP format, 2) morphometric data for birds included in the pedigree analysis, 3) Spectrophotometry measurements and 4) Results from the dosage of melanins for 12 individuals. Localities coordinates are also provided. All_data_microsats_spectro_melanindosage.xlsx Unfiltered VCF file for 42 individuals SNPs calls for individual GBS data from the same three localities as in Pooled RAD-seq. Colors and localities for each individuals are provided in a separate excel file. Highlands_dataset.recode.vcf Information about individuals included in the GBS VCF file Morph and localities for each individual included in the GBS study. Localities_Morphs_individuals_VCF.xlsx
publishDate 2017
dc.date.none.fl_str_mv 2017
2022
2022
dc.type.none.fl_str_mv info:eu-repo/semantics/dataset
http://purl.org/coar/resource_type/c_ddb1
format dataset
dc.identifier.none.fl_str_mv http://hdl.handle.net/10261/281390
http://datadryad.org/stash/dataset/doi:10.5061/dryad.1q9g7
url http://hdl.handle.net/10261/281390
http://datadryad.org/stash/dataset/doi:10.5061/dryad.1q9g7
dc.language.none.fl_str_mv Inglés
language_invalid_str_mv Inglés
dc.relation.none.fl_str_mv Bourgeois, Yann X. C.; Delahaie, Boris; Gautier, Mathieu; Lhuillier, Emeline; Malé, Pierre-Jean G.; Bertrand, Joris A. M.; Cornuault, Josselin; Wakamatsu, Kazumasa; Bouchez, Olivier; Mould, Claire; Bruxaux, Jade; Holota, Hélène; Milá, Borja; Thébaud, Christophe (2017): A novel locus on chromosome 1 underlies the evolution of a melanic plumage polymorphism in a wild songbird ; https://doi.org/10.1098/rsos.160805. http://hdl.handle.net/10261/152349
https://doi.org/10.5061/dryad.1q9g7
Sí
dc.rights.none.fl_str_mv info:eu-repo/semantics/openAccess
eu_rights_str_mv openAccess
dc.format.none.fl_str_mv vcf; xlsx
dc.publisher.none.fl_str_mv Dryad
publisher.none.fl_str_mv Dryad
dc.source.none.fl_str_mv reponame:DIGITAL.CSIC. Repositorio Institucional del CSIC
instname:Consejo Superior de Investigaciones Científicas (CSIC)
instname_str Consejo Superior de Investigaciones Científicas (CSIC)
reponame_str DIGITAL.CSIC. Repositorio Institucional del CSIC
collection DIGITAL.CSIC. Repositorio Institucional del CSIC
repository.name.fl_str_mv
repository.mail.fl_str_mv
_version_ 1869403293854203904
score 15.811543

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