EvoMS: an evolutionary tool to find de novo metabolic pathways (IF 1.472)

The evolutionary metabolic synthesizer (EvoMS) is an evolutionary tool capable of finding novel metabolic pathways linking several compounds through feasible reactions. It allows system biologists to explore different alternatives for relating specific metabolites, offering the possibility of indica...

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Detalhes bibliográficos
Autores: Gerard, Matias Fernando, Stegmayer, Georgina, Milone, Diego Humberto
Formato: artículo
Estado:Versión publicada
Fecha de publicación:2015
País:Argentina
Recursos:Consejo Nacional de Investigaciones Científicas y Técnicas
Repositorio:CONICET Digital (CONICET)
Idioma:inglés
OAI Identifier:oai:ri.conicet.gov.ar:11336/46343
Acesso em linha:http://hdl.handle.net/11336/46343
Access Level:acceso abierto
Palavra-chave:Evolutionary Algorithms
Metabolic Network Representation
Metabolic Pathway Searching
Pathway Synthesis
https://purl.org/becyt/ford/1.2
https://purl.org/becyt/ford/1
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spelling EvoMS: an evolutionary tool to find de novo metabolic pathways (IF 1.472)Gerard, Matias FernandoStegmayer, GeorginaMilone, Diego HumbertoEvolutionary AlgorithmsMetabolic Network RepresentationMetabolic Pathway SearchingPathway Synthesishttps://purl.org/becyt/ford/1.2https://purl.org/becyt/ford/1The evolutionary metabolic synthesizer (EvoMS) is an evolutionary tool capable of finding novel metabolic pathways linking several compounds through feasible reactions. It allows system biologists to explore different alternatives for relating specific metabolites, offering the possibility of indicating the initial compound or allowing the algorithm to automatically select it. Searching process can be followed graphically through several plots of the evolutionary process. Metabolic pathways found are displayed in a web browser as directed graphs. In all cases, solutions are networks of reactions that produce linear or branched metabolic pathways which are feasible from the specified set of available compounds.Fil: Gerard, Matias Fernando. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Conicet - Santa Fe. Instituto de Investigación en Señales, Sistemas e Inteligencia Computacional. Universidad Nacional del Litoral. Facultad de Ingeniería y Ciencias Hídricas. Instituto de Investigación en Señales, Sistemas e Inteligencia Computacional; ArgentinaFil: Stegmayer, Georgina. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Conicet - Santa Fe. Instituto de Investigación en Señales, Sistemas e Inteligencia Computacional. Universidad Nacional del Litoral. Facultad de Ingeniería y Ciencias Hídricas. Instituto de Investigación en Señales, Sistemas e Inteligencia Computacional; ArgentinaFil: Milone, Diego Humberto. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Conicet - Santa Fe. Instituto de Investigación en Señales, Sistemas e Inteligencia Computacional. Universidad Nacional del Litoral. Facultad de Ingeniería y Ciencias Hídricas. Instituto de Investigación en Señales, Sistemas e Inteligencia Computacional; ArgentinaElsevier2015-08info:eu-repo/semantics/articleinfo:eu-repo/semantics/publishedVersionhttp://purl.org/coar/resource_type/c_6501info:ar-repo/semantics/articuloapplication/pdfapplication/pdfhttp://hdl.handle.net/11336/46343Gerard, Matias Fernando; Stegmayer, Georgina; Milone, Diego Humberto; EvoMS: an evolutionary tool to find de novo metabolic pathways (IF 1.472); Elsevier; Biosystems; 134; 8-2015; 43-470303-2647CONICET DigitalCONICETenginfo:eu-repo/semantics/altIdentifier/doi/10.1016/j.biosystems.2015.04.006info:eu-repo/semantics/altIdentifier/url/https://www.sciencedirect.com/science/article/pii/S0303264715000647info:eu-repo/semantics/openAccesshttps://creativecommons.org/licenses/by-nc-sa/2.5/ar/reponame:CONICET Digital (CONICET)instname:Consejo Nacional de Investigaciones Científicas y Técnicas2024-05-08T13:32:46Zoai:ri.conicet.gov.ar:11336/46343instacron:CONICETInstitucionalhttp://ri.conicet.gov.ar/Organismo científico-tecnológicoNo correspondehttp://ri.conicet.gov.ar/oai/requestdasensio@conicet.gov.ar; lcarlino@conicet.gov.arArgentinaNo correspondeNo correspondeNo correspondeopendoar:34982024-05-08 13:32:46.875CONICET Digital (CONICET) - Consejo Nacional de Investigaciones Científicas y Técnicasfalse
dc.title.none.fl_str_mv EvoMS: an evolutionary tool to find de novo metabolic pathways (IF 1.472)
title EvoMS: an evolutionary tool to find de novo metabolic pathways (IF 1.472)
spellingShingle EvoMS: an evolutionary tool to find de novo metabolic pathways (IF 1.472)
Gerard, Matias Fernando
Evolutionary Algorithms
Metabolic Network Representation
Metabolic Pathway Searching
Pathway Synthesis
https://purl.org/becyt/ford/1.2
https://purl.org/becyt/ford/1
title_short EvoMS: an evolutionary tool to find de novo metabolic pathways (IF 1.472)
title_full EvoMS: an evolutionary tool to find de novo metabolic pathways (IF 1.472)
title_fullStr EvoMS: an evolutionary tool to find de novo metabolic pathways (IF 1.472)
title_full_unstemmed EvoMS: an evolutionary tool to find de novo metabolic pathways (IF 1.472)
title_sort EvoMS: an evolutionary tool to find de novo metabolic pathways (IF 1.472)
dc.creator.none.fl_str_mv Gerard, Matias Fernando
Stegmayer, Georgina
Milone, Diego Humberto
author Gerard, Matias Fernando
author_facet Gerard, Matias Fernando
Stegmayer, Georgina
Milone, Diego Humberto
author_role author
author2 Stegmayer, Georgina
Milone, Diego Humberto
author2_role author
author
dc.subject.none.fl_str_mv Evolutionary Algorithms
Metabolic Network Representation
Metabolic Pathway Searching
Pathway Synthesis
https://purl.org/becyt/ford/1.2
https://purl.org/becyt/ford/1
topic Evolutionary Algorithms
Metabolic Network Representation
Metabolic Pathway Searching
Pathway Synthesis
https://purl.org/becyt/ford/1.2
https://purl.org/becyt/ford/1
description The evolutionary metabolic synthesizer (EvoMS) is an evolutionary tool capable of finding novel metabolic pathways linking several compounds through feasible reactions. It allows system biologists to explore different alternatives for relating specific metabolites, offering the possibility of indicating the initial compound or allowing the algorithm to automatically select it. Searching process can be followed graphically through several plots of the evolutionary process. Metabolic pathways found are displayed in a web browser as directed graphs. In all cases, solutions are networks of reactions that produce linear or branched metabolic pathways which are feasible from the specified set of available compounds.
publishDate 2015
dc.date.none.fl_str_mv 2015-08
dc.type.none.fl_str_mv info:eu-repo/semantics/article
info:eu-repo/semantics/publishedVersion
http://purl.org/coar/resource_type/c_6501
info:ar-repo/semantics/articulo
format article
status_str publishedVersion
dc.identifier.none.fl_str_mv http://hdl.handle.net/11336/46343
Gerard, Matias Fernando; Stegmayer, Georgina; Milone, Diego Humberto; EvoMS: an evolutionary tool to find de novo metabolic pathways (IF 1.472); Elsevier; Biosystems; 134; 8-2015; 43-47
0303-2647
CONICET Digital
CONICET
url http://hdl.handle.net/11336/46343
identifier_str_mv Gerard, Matias Fernando; Stegmayer, Georgina; Milone, Diego Humberto; EvoMS: an evolutionary tool to find de novo metabolic pathways (IF 1.472); Elsevier; Biosystems; 134; 8-2015; 43-47
0303-2647
CONICET Digital
CONICET
dc.language.none.fl_str_mv eng
language eng
dc.relation.none.fl_str_mv info:eu-repo/semantics/altIdentifier/doi/10.1016/j.biosystems.2015.04.006
info:eu-repo/semantics/altIdentifier/url/https://www.sciencedirect.com/science/article/pii/S0303264715000647
dc.rights.none.fl_str_mv info:eu-repo/semantics/openAccess
https://creativecommons.org/licenses/by-nc-sa/2.5/ar/
eu_rights_str_mv openAccess
rights_invalid_str_mv https://creativecommons.org/licenses/by-nc-sa/2.5/ar/
dc.format.none.fl_str_mv application/pdf
application/pdf
dc.publisher.none.fl_str_mv Elsevier
publisher.none.fl_str_mv Elsevier
dc.source.none.fl_str_mv reponame:CONICET Digital (CONICET)
instname:Consejo Nacional de Investigaciones Científicas y Técnicas
instname_str Consejo Nacional de Investigaciones Científicas y Técnicas
reponame_str CONICET Digital (CONICET)
collection CONICET Digital (CONICET)
repository.name.fl_str_mv CONICET Digital (CONICET) - Consejo Nacional de Investigaciones Científicas y Técnicas
repository.mail.fl_str_mv dasensio@conicet.gov.ar; lcarlino@conicet.gov.ar
_version_ 1799194612717322240
score 15,811543

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