A global analysis of Y-chromosomal haplotype diversity for 23 STR loci

Corach, Daniel; Caputo, Mariela; Marino, Miguel Eduardo; Purps, Josephine; Siegert, Sabine; Willuweit, Sascha; Nagy, Marion; Alves, Cíntia; Salazar, Renato; Angustia, Sheila M. T.; Santos, Lorna H.; Anslinger, Katja; Bayer, Birgit; Ayub, Qasim; Wei, Wei; Xue, Yali; Tyler Smith, Chris; Baeta Bafalluy, Miriam; Martínez Jarreta, Begoña; Egyed, Balazs; Balitzki, Beate; Tschumi, Sibylle; Ballard, David; Syndercombe Court, Denise; Barrantes, Xinia; Bäßler, Gerhard; Berger, Burkhard; Niederstätter, Haral; Parson, Walther; Davis, Carey; Furfuro, Sandra; Locarno, Laura

A global analysis of Y-chromosomal haplotype diversity for 23 STR loci

In a worldwide collaborative effort, 19,630 Y-chromosomes were sampled from 129 different populations in 51 countries. These chromosomes were typed for 23 short-tandem repeat (STR) loci (DYS19, DYS389I, DYS389II, DYS390, DYS391, DYS392, DYS393, DYS385ab, DYS437, DYS438, DYS439, DYS448, DYS456, DYS45...

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Autores:	Corach, Daniel, Caputo, Mariela, Marino, Miguel Eduardo, Purps, Josephine, Siegert, Sabine, Willuweit, Sascha, Nagy, Marion, Alves, Cíntia, Salazar, Renato, Angustia, Sheila M. T., Santos, Lorna H., Anslinger, Katja, Bayer, Birgit, Ayub, Qasim, Wei, Wei, Xue, Yali, Tyler Smith, Chris, Baeta Bafalluy, Miriam, Martínez Jarreta, Begoña, Egyed, Balazs, Balitzki, Beate, Tschumi, Sibylle, Ballard, David, Syndercombe Court, Denise, Barrantes, Xinia, Bäßler, Gerhard, Berger, Burkhard, Niederstätter, Haral, Parson, Walther, Davis, Carey, Furfuro, Sandra, Locarno, Laura
Tipo de recurso:	artículo
Estado:	Versión publicada
Fecha de publicación:	2014
País:	Argentina
Institución:	Consejo Nacional de Investigaciones Científicas y Técnicas
Repositorio:	CONICET Digital (CONICET)
Idioma:	inglés
OAI Identifier:	oai:ri.conicet.gov.ar:11336/16096
Acceso en línea:	http://hdl.handle.net/11336/16096
Access Level:	acceso abierto
Palabra clave:	Gene diversity Discriminatory power AMOVA Population structure Database https://purl.org/becyt/ford/1.6 https://purl.org/becyt/ford/1

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network_acronym_str	AR
network_name_str	Argentina
repository_id_str
dc.title.none.fl_str_mv	A global analysis of Y-chromosomal haplotype diversity for 23 STR loci
title	A global analysis of Y-chromosomal haplotype diversity for 23 STR loci
spellingShingle	A global analysis of Y-chromosomal haplotype diversity for 23 STR loci Corach, Daniel Gene diversity Discriminatory power AMOVA Population structure Database https://purl.org/becyt/ford/1.6 https://purl.org/becyt/ford/1
title_short	A global analysis of Y-chromosomal haplotype diversity for 23 STR loci
title_full	A global analysis of Y-chromosomal haplotype diversity for 23 STR loci
title_fullStr	A global analysis of Y-chromosomal haplotype diversity for 23 STR loci
title_full_unstemmed	A global analysis of Y-chromosomal haplotype diversity for 23 STR loci
title_sort	A global analysis of Y-chromosomal haplotype diversity for 23 STR loci
dc.creator.none.fl_str_mv	Corach, Daniel Caputo, Mariela Marino, Miguel Eduardo Purps, Josephine Siegert, Sabine Willuweit, Sascha Nagy, Marion Alves, Cíntia Salazar, Renato Angustia, Sheila M. T. Santos, Lorna H. Anslinger, Katja Bayer, Birgit Ayub, Qasim Wei, Wei Xue, Yali Tyler Smith, Chris Baeta Bafalluy, Miriam Martínez Jarreta, Begoña Egyed, Balazs Balitzki, Beate Tschumi, Sibylle Ballard, David Syndercombe Court, Denise Barrantes, Xinia Bäßler, Gerhard Berger, Burkhard Niederstätter, Haral Parson, Walther Davis, Carey Furfuro, Sandra Locarno, Laura
author	Corach, Daniel
author_facet	Corach, Daniel Caputo, Mariela Marino, Miguel Eduardo Purps, Josephine Siegert, Sabine Willuweit, Sascha Nagy, Marion Alves, Cíntia Salazar, Renato Angustia, Sheila M. T. Santos, Lorna H. Anslinger, Katja Bayer, Birgit Ayub, Qasim Wei, Wei Xue, Yali Tyler Smith, Chris Baeta Bafalluy, Miriam Martínez Jarreta, Begoña Egyed, Balazs Balitzki, Beate Tschumi, Sibylle Ballard, David Syndercombe Court, Denise Barrantes, Xinia Bäßler, Gerhard Berger, Burkhard Niederstätter, Haral Parson, Walther Davis, Carey Furfuro, Sandra Locarno, Laura
author_role	author
author2	Caputo, Mariela Marino, Miguel Eduardo Purps, Josephine Siegert, Sabine Willuweit, Sascha Nagy, Marion Alves, Cíntia Salazar, Renato Angustia, Sheila M. T. Santos, Lorna H. Anslinger, Katja Bayer, Birgit Ayub, Qasim Wei, Wei Xue, Yali Tyler Smith, Chris Baeta Bafalluy, Miriam Martínez Jarreta, Begoña Egyed, Balazs Balitzki, Beate Tschumi, Sibylle Ballard, David Syndercombe Court, Denise Barrantes, Xinia Bäßler, Gerhard Berger, Burkhard Niederstätter, Haral Parson, Walther Davis, Carey Furfuro, Sandra Locarno, Laura
author2_role	author author author author author author author author author author author author author author author author author author author author author author author author author author author author author author author
dc.subject.none.fl_str_mv	Gene diversity Discriminatory power AMOVA Population structure Database https://purl.org/becyt/ford/1.6 https://purl.org/becyt/ford/1
topic	Gene diversity Discriminatory power AMOVA Population structure Database https://purl.org/becyt/ford/1.6 https://purl.org/becyt/ford/1
description	In a worldwide collaborative effort, 19,630 Y-chromosomes were sampled from 129 different populations in 51 countries. These chromosomes were typed for 23 short-tandem repeat (STR) loci (DYS19, DYS389I, DYS389II, DYS390, DYS391, DYS392, DYS393, DYS385ab, DYS437, DYS438, DYS439, DYS448, DYS456, DYS458, DYS635, GATAH4, DYS481, DYS533, DYS549, DYS570, DYS576, and DYS643) and using the PowerPlex Y23 System (PPY23, Promega Corporation, Madison, WI). Locus-specific allelic spectra of these markers were determined and a consistently high level of allelic diversity was observed. A considerable number of null, duplicate and off-ladder alleles were revealed. Standard single-locus and haplotype-based parameters were calculated and compared between subsets of Y-STR markers established for forensic casework. The PPY23 marker set provides substantially stronger discriminatory power than other available kits but at the same time reveals the same general patterns of population structure as other marker sets. A strong correlation was observed between the number of Y-STRs included in a marker set and some of the forensic parameters under study. Interestingly a weak but consistent trend toward smaller genetic distances resulting from larger numbers of markers became apparent.
publishDate	2014
dc.date.none.fl_str_mv	2014-09
dc.type.none.fl_str_mv	info:eu-repo/semantics/article info:eu-repo/semantics/publishedVersion http://purl.org/coar/resource_type/c_6501 info:ar-repo/semantics/articulo
format	article
status_str	publishedVersion
dc.identifier.none.fl_str_mv	http://hdl.handle.net/11336/16096 Corach, Daniel; Caputo, Mariela; Marino, Miguel Eduardo; Purps, Josephine; Siegert, Sabine; et al.; A global analysis of Y-chromosomal haplotype diversity for 23 STR loci; Elsevier Ireland; Forensic Science International: Genetics; 12; 9-2014; 12-23 1872-4973
url	http://hdl.handle.net/11336/16096
identifier_str_mv	Corach, Daniel; Caputo, Mariela; Marino, Miguel Eduardo; Purps, Josephine; Siegert, Sabine; et al.; A global analysis of Y-chromosomal haplotype diversity for 23 STR loci; Elsevier Ireland; Forensic Science International: Genetics; 12; 9-2014; 12-23 1872-4973
dc.language.none.fl_str_mv	eng
language	eng
dc.relation.none.fl_str_mv	info:eu-repo/semantics/altIdentifier/url/http://www.ncbi.nlm.nih.gov/pubmed/24854874 info:eu-repo/semantics/altIdentifier/url/http://www.sciencedirect.com/science/article/pii/S1872497314000842 info:eu-repo/semantics/altIdentifier/doi/10.1016/j.fsigen.2014.04.008
dc.rights.none.fl_str_mv	info:eu-repo/semantics/openAccess https://creativecommons.org/licenses/by/2.5/ar/
eu_rights_str_mv	openAccess
rights_invalid_str_mv	https://creativecommons.org/licenses/by/2.5/ar/
dc.format.none.fl_str_mv	application/pdf application/pdf application/pdf
dc.publisher.none.fl_str_mv	Elsevier Ireland
publisher.none.fl_str_mv	Elsevier Ireland
dc.source.none.fl_str_mv	reponame:CONICET Digital (CONICET) instname:Consejo Nacional de Investigaciones Científicas y Técnicas
instname_str	Consejo Nacional de Investigaciones Científicas y Técnicas
reponame_str	CONICET Digital (CONICET)
collection	CONICET Digital (CONICET)
repository.name.fl_str_mv	CONICET Digital (CONICET) - Consejo Nacional de Investigaciones Científicas y Técnicas
repository.mail.fl_str_mv	dasensio@conicet.gov.ar; lcarlino@conicet.gov.ar
_version_	1799196359669055488
spelling	A global analysis of Y-chromosomal haplotype diversity for 23 STR lociCorach, DanielCaputo, MarielaMarino, Miguel EduardoPurps, JosephineSiegert, SabineWilluweit, SaschaNagy, MarionAlves, CíntiaSalazar, RenatoAngustia, Sheila M. T.Santos, Lorna H.Anslinger, KatjaBayer, BirgitAyub, QasimWei, WeiXue, YaliTyler Smith, ChrisBaeta Bafalluy, MiriamMartínez Jarreta, BegoñaEgyed, BalazsBalitzki, BeateTschumi, SibylleBallard, DavidSyndercombe Court, DeniseBarrantes, XiniaBäßler, GerhardBerger, BurkhardNiederstätter, HaralParson, WaltherDavis, CareyFurfuro, SandraLocarno, LauraGene diversityDiscriminatory powerAMOVAPopulation structureDatabasehttps://purl.org/becyt/ford/1.6https://purl.org/becyt/ford/1In a worldwide collaborative effort, 19,630 Y-chromosomes were sampled from 129 different populations in 51 countries. These chromosomes were typed for 23 short-tandem repeat (STR) loci (DYS19, DYS389I, DYS389II, DYS390, DYS391, DYS392, DYS393, DYS385ab, DYS437, DYS438, DYS439, DYS448, DYS456, DYS458, DYS635, GATAH4, DYS481, DYS533, DYS549, DYS570, DYS576, and DYS643) and using the PowerPlex Y23 System (PPY23, Promega Corporation, Madison, WI). Locus-specific allelic spectra of these markers were determined and a consistently high level of allelic diversity was observed. A considerable number of null, duplicate and off-ladder alleles were revealed. Standard single-locus and haplotype-based parameters were calculated and compared between subsets of Y-STR markers established for forensic casework. The PPY23 marker set provides substantially stronger discriminatory power than other available kits but at the same time reveals the same general patterns of population structure as other marker sets. A strong correlation was observed between the number of Y-STRs included in a marker set and some of the forensic parameters under study. Interestingly a weak but consistent trend toward smaller genetic distances resulting from larger numbers of markers became apparent.Fil: Corach, Daniel. Universidad de Buenos Aires. Facultad de Farmacia y Bioquímica. Servicio de Huellas Digitales Genéticas; Argentina. Consejo Nacional de Investigaciones Científicas y Técnicas; ArgentinaFil: Caputo, Mariela. Universidad de Buenos Aires. Facultad de Farmacia y Bioquímica. Servicio de Huellas Digitales Genéticas; Argentina. Consejo Nacional de Investigaciones Científicas y Técnicas; ArgentinaFil: Marino, Miguel Eduardo. Universidad Nacional de Cuyo. Facultad de Ciencias Médicas. Laboratorio de Analisis de ADN; Argentina. Consejo Nacional de Investigaciones Científicas y Técnicas; ArgentinaFil: Purps, Josephine. Charité-Universitätsmedizin; AlemaniaFil: Siegert, Sabine. University of Cologne; AlemaniaFil: Willuweit, Sascha. Charité-Universitätsmedizin; AlemaniaFil: Nagy, Marion. Charité-Universitätsmedizin; AlemaniaFil: Alves, Cíntia. Universidad de Porto; PortugalFil: Salazar, Renato. Universidad de Porto; PortugalFil: Angustia, Sheila M. T.. Philippine National Police Crime Laboratory; FilipinasFil: Santos, Lorna H.. Philippine National Police Crime Laboratory; FilipinasFil: Anslinger, Katja. Universitat Genzentrum Der Ludwing-maximilians; AlemaniaFil: Bayer, Birgit. Universitat Genzentrum Der Ludwing-maximilians; AlemaniaFil: Ayub, Qasim. The Wellcome Trust Sanger Institute; Reino UnidoFil: Wei, Wei. The Wellcome Trust Sanger Institute; Reino UnidoFil: Xue, Yali. The Wellcome Trust Sanger Institute; Reino UnidoFil: Tyler Smith, Chris. The Wellcome Trust Sanger Institute; Reino UnidoFil: Baeta Bafalluy, Miriam. Universidad de Zaragoza; EspañaFil: Martínez Jarreta, Begoña. Universidad de Zaragoza; EspañaFil: Egyed, Balazs. Eotvos University, Budapest; ArgentinaFil: Balitzki, Beate. Universidad de Basilea; SuizaFil: Tschumi, Sibylle. Universidad de Basilea; SuizaFil: Ballard, David. King; Reino UnidoFil: Syndercombe Court, Denise. King; Reino UnidoFil: Barrantes, Xinia. Poder Judicial, Forensic Sciences Department; Costa RicaFil: Bäßler, Gerhard. Landeskriminalamt Baden-Württemberg; AlemaniaFil: Berger, Burkhard. Universidad de Innsbruck; AustriaFil: Niederstätter, Haral. Universidad de Innsbruck; AustriaFil: Parson, Walther. Universidad de Innsbruck; Austria. University Park; Estados UnidosFil: Davis, Carey. Department of Molecular and Medical Genetics; Estados Unidos. Institute of Applied Genetics; Estados UnidosFil: Furfuro, Sandra. Universidad Nacional de Cuyo. Facultad de Ciencias Médicas. Laboratorio de Análisis de ADN; ArgentinaFil: Locarno, Laura. Universidad Nacional de Cuyo. Facultad de Ciencias Médicas. Laboratorio de Análisis de ADN; ArgentinaElsevier Ireland2014-09info:eu-repo/semantics/articleinfo:eu-repo/semantics/publishedVersionhttp://purl.org/coar/resource_type/c_6501info:ar-repo/semantics/articuloapplication/pdfapplication/pdfapplication/pdfhttp://hdl.handle.net/11336/16096Corach, Daniel; Caputo, Mariela; Marino, Miguel Eduardo; Purps, Josephine; Siegert, Sabine; et al.; A global analysis of Y-chromosomal haplotype diversity for 23 STR loci; Elsevier Ireland; Forensic Science International: Genetics; 12; 9-2014; 12-231872-4973enginfo:eu-repo/semantics/altIdentifier/url/http://www.ncbi.nlm.nih.gov/pubmed/24854874info:eu-repo/semantics/altIdentifier/url/http://www.sciencedirect.com/science/article/pii/S1872497314000842info:eu-repo/semantics/altIdentifier/doi/10.1016/j.fsigen.2014.04.008info:eu-repo/semantics/openAccesshttps://creativecommons.org/licenses/by/2.5/ar/reponame:CONICET Digital (CONICET)instname:Consejo Nacional de Investigaciones Científicas y Técnicas2024-05-08T14:24:38Zoai:ri.conicet.gov.ar:11336/16096instacron:CONICETInstitucionalhttp://ri.conicet.gov.ar/Organismo científico-tecnológicoNo correspondehttp://ri.conicet.gov.ar/oai/requestdasensio@conicet.gov.ar; lcarlino@conicet.gov.arArgentinaNo correspondeNo correspondeNo correspondeopendoar:34982024-05-08 14:24:38.381CONICET Digital (CONICET) - Consejo Nacional de Investigaciones Científicas y Técnicasfalse
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A global analysis of Y-chromosomal haplotype diversity for 23 STR loci

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