ERGA-BGE reference genome of Hanak's bat ( Pipistrellus hanaki), an IUCN Vulnerable species restricted to forest-like biotopes
Hanak's bat ( Pipistrellus hanaki Hulva and Benda 2004) is one of the most range restricted mammals in Europe, since it occurs only in Cyrenaica, Libya, and Crete (Greece). It is currently classified as 'Vulnerable' on the IUCN Red List, with its foraging habitat threatened by a numbe...
| Autores: | , , , , , , , , , , , , , , , , , , , , , , , |
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| Tipo de recurso: | artículo |
| Estado: | Versión publicada |
| Fecha de publicación: | 2025 |
| País: | España |
| Institución: | Consejo Superior de Investigaciones Científicas (CSIC) |
| Repositorio: | DIGITAL.CSIC. Repositorio Institucional del CSIC |
| OAI Identifier: | oai:digital.csic.es:10261/425405 |
| Acceso en línea: | http://hdl.handle.net/10261/425405 https://api.elsevier.com/content/abstract/scopus_id/105029461206 |
| Access Level: | acceso abierto |
| Palabra clave: | Biodiversity Genomics Europe Earth Biogenome Project European Reference Genome Atlas Hanak's bat Pipistrellus hanaki Vespertilionidae family Genome assembly Νανονυχτερίδα του Hanak |
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ERGA-BGE reference genome of Hanak's bat ( Pipistrellus hanaki), an IUCN Vulnerable species restricted to forest-like biotopesGeorgakakis, PanagiotisKarakasi, DanaeLymberakis, PetrosPapadimitrakis, ManolisStratakis, ManosBitzilekis, EleftheriosPoulakakis, NikolaosBöhne, AstridMonteiro, RitaFernández García, Rosa MaríaEscudero, NuriaMoussy, AliceCruaud, CorinneLabadie, KarineDemirdjian, LolaMangenot, SophieBelser, CarolineWincker, PatrickOliveira, Pedro HAury, Jean-MarcHaggerty, LeanneSinha, SwatiMartin, FergalBortoluzzi, ChiaraBiodiversity Genomics EuropeEarth Biogenome ProjectEuropean Reference Genome AtlasHanak's batPipistrellus hanakiVespertilionidae familyGenome assemblyΝανονυχτερίδα του HanakHanak's bat ( Pipistrellus hanaki Hulva and Benda 2004) is one of the most range restricted mammals in Europe, since it occurs only in Cyrenaica, Libya, and Crete (Greece). It is currently classified as 'Vulnerable' on the IUCN Red List, with its foraging habitat threatened by a number of human activities. The reference genome of Hanak's bat ( Pipistrellus hanaki) will provide a crucial resource for uncovering the species phylogenetic history and will help assess the degree of genetic isolation among its populations. A total of 23 contiguous chromosomal pseudomolecules (sex chromosomes included) were assembled from the genome sequence. This chromosome-level assembly encompasses 1.9 Gb, composed of 447 contigs and 141 scaffolds, with contig and scaffold N50 values of 48.7 Mb and 89.1 Mb, respectively.Biodiversity Genomics Europe (Grant no.101059492) is funded by Horizon Europe under the Biodiversity, Circular Economy and Environment call (REA.B.3); co-funded by the Swiss State Secretariat for Education, Research and Innovation (SERI) under contract numbers 22.00173 and 24.00054; and by the UK Research and Innovation (UKRI) under the Department for Business, Energy and Industrial Strategy’s Horizon Europe Guarantee Scheme. This work was supported by the Genoscope, the Commissariat à l'Énergie Atomique et aux Énergies Alternatives (CEA), France Génomique (ANR-10-INBS-09-08), and the exploratory research programme ‘ATLASea: Atlas of marine genomes and its targeted project SEQ-Sea (ANR-22-EXAT-0003-SEQ-Sea).Peer reviewedEuropean CommissionTaylor & FrancisF1000ResearchEuropean CommissionState Secretariat for Education, Research and Innovation (Switzerland)UK Research and InnovationCommissariat à l'Ènergie Atomique et aux Ènergies Alternatives (France)Georgakakis, Panagiotis [0000-0002-9416-9899]Lymberakis, Petros [0000-0002-5067-9600]Stratakis, Manos [0000-0002-6291-9245]Bitzilekis, Eleftherios [0009-0004-5434-0550]Böhne, Astrid [0000-0002-1284-3115]Monteiro, Rita [0000-0003-1374-4474]Belser, Caroline [0000-0002-8108-9910]Oliveira, Pedro H [0000-0003-3161-8367]Haggerty, Leanne [0000-0001-8843-3596]Sinha, Swati [0000-0001-6718-0315]Bortoluzzi, Chiara [0000-0001-6589-6635]Consejo Superior de Investigaciones Científicas [https://ror.org/02gfc7t72]202620262025info:eu-repo/semantics/articlehttp://purl.org/coar/resource_type/c_6501Publisher's versioninfo:eu-repo/semantics/publishedVersionapplication/pdfhttp://hdl.handle.net/10261/425405https://api.elsevier.com/content/abstract/scopus_id/105029461206reponame:DIGITAL.CSIC. Repositorio Institucional del CSICinstname:Consejo Superior de Investigaciones Científicas (CSIC)Inglés#PLACEHOLDER_PARENT_METADATA_VALUE#info:eu-repo/grantAgreement/EC/HE/101059492Open research EuropeThe underlying dataset has been published as supplementary material of the article in the publisher platform at DOI http://dx.doi.org/10.12688/openreseurope.20937.2http://dx.doi.org/10.12688/openreseurope.20937.2Síinfo:eu-repo/semantics/openAccessoai:digital.csic.es:10261/4254052026-05-22T06:33:51Z |
| dc.title.none.fl_str_mv |
ERGA-BGE reference genome of Hanak's bat ( Pipistrellus hanaki), an IUCN Vulnerable species restricted to forest-like biotopes |
| title |
ERGA-BGE reference genome of Hanak's bat ( Pipistrellus hanaki), an IUCN Vulnerable species restricted to forest-like biotopes |
| spellingShingle |
ERGA-BGE reference genome of Hanak's bat ( Pipistrellus hanaki), an IUCN Vulnerable species restricted to forest-like biotopes Georgakakis, Panagiotis Biodiversity Genomics Europe Earth Biogenome Project European Reference Genome Atlas Hanak's bat Pipistrellus hanaki Vespertilionidae family Genome assembly Νανονυχτερίδα του Hanak |
| title_short |
ERGA-BGE reference genome of Hanak's bat ( Pipistrellus hanaki), an IUCN Vulnerable species restricted to forest-like biotopes |
| title_full |
ERGA-BGE reference genome of Hanak's bat ( Pipistrellus hanaki), an IUCN Vulnerable species restricted to forest-like biotopes |
| title_fullStr |
ERGA-BGE reference genome of Hanak's bat ( Pipistrellus hanaki), an IUCN Vulnerable species restricted to forest-like biotopes |
| title_full_unstemmed |
ERGA-BGE reference genome of Hanak's bat ( Pipistrellus hanaki), an IUCN Vulnerable species restricted to forest-like biotopes |
| title_sort |
ERGA-BGE reference genome of Hanak's bat ( Pipistrellus hanaki), an IUCN Vulnerable species restricted to forest-like biotopes |
| dc.creator.none.fl_str_mv |
Georgakakis, Panagiotis Karakasi, Danae Lymberakis, Petros Papadimitrakis, Manolis Stratakis, Manos Bitzilekis, Eleftherios Poulakakis, Nikolaos Böhne, Astrid Monteiro, Rita Fernández García, Rosa María Escudero, Nuria Moussy, Alice Cruaud, Corinne Labadie, Karine Demirdjian, Lola Mangenot, Sophie Belser, Caroline Wincker, Patrick Oliveira, Pedro H Aury, Jean-Marc Haggerty, Leanne Sinha, Swati Martin, Fergal Bortoluzzi, Chiara |
| author |
Georgakakis, Panagiotis |
| author_facet |
Georgakakis, Panagiotis Karakasi, Danae Lymberakis, Petros Papadimitrakis, Manolis Stratakis, Manos Bitzilekis, Eleftherios Poulakakis, Nikolaos Böhne, Astrid Monteiro, Rita Fernández García, Rosa María Escudero, Nuria Moussy, Alice Cruaud, Corinne Labadie, Karine Demirdjian, Lola Mangenot, Sophie Belser, Caroline Wincker, Patrick Oliveira, Pedro H Aury, Jean-Marc Haggerty, Leanne Sinha, Swati Martin, Fergal Bortoluzzi, Chiara |
| author_role |
author |
| author2 |
Karakasi, Danae Lymberakis, Petros Papadimitrakis, Manolis Stratakis, Manos Bitzilekis, Eleftherios Poulakakis, Nikolaos Böhne, Astrid Monteiro, Rita Fernández García, Rosa María Escudero, Nuria Moussy, Alice Cruaud, Corinne Labadie, Karine Demirdjian, Lola Mangenot, Sophie Belser, Caroline Wincker, Patrick Oliveira, Pedro H Aury, Jean-Marc Haggerty, Leanne Sinha, Swati Martin, Fergal Bortoluzzi, Chiara |
| author2_role |
author author author author author author author author author author author author author author author author author author author author author author author |
| dc.contributor.none.fl_str_mv |
European Commission State Secretariat for Education, Research and Innovation (Switzerland) UK Research and Innovation Commissariat à l'Ènergie Atomique et aux Ènergies Alternatives (France) Georgakakis, Panagiotis [0000-0002-9416-9899] Lymberakis, Petros [0000-0002-5067-9600] Stratakis, Manos [0000-0002-6291-9245] Bitzilekis, Eleftherios [0009-0004-5434-0550] Böhne, Astrid [0000-0002-1284-3115] Monteiro, Rita [0000-0003-1374-4474] Belser, Caroline [0000-0002-8108-9910] Oliveira, Pedro H [0000-0003-3161-8367] Haggerty, Leanne [0000-0001-8843-3596] Sinha, Swati [0000-0001-6718-0315] Bortoluzzi, Chiara [0000-0001-6589-6635] Consejo Superior de Investigaciones Científicas [https://ror.org/02gfc7t72] |
| dc.subject.none.fl_str_mv |
Biodiversity Genomics Europe Earth Biogenome Project European Reference Genome Atlas Hanak's bat Pipistrellus hanaki Vespertilionidae family Genome assembly Νανονυχτερίδα του Hanak |
| topic |
Biodiversity Genomics Europe Earth Biogenome Project European Reference Genome Atlas Hanak's bat Pipistrellus hanaki Vespertilionidae family Genome assembly Νανονυχτερίδα του Hanak |
| description |
Hanak's bat ( Pipistrellus hanaki Hulva and Benda 2004) is one of the most range restricted mammals in Europe, since it occurs only in Cyrenaica, Libya, and Crete (Greece). It is currently classified as 'Vulnerable' on the IUCN Red List, with its foraging habitat threatened by a number of human activities. The reference genome of Hanak's bat ( Pipistrellus hanaki) will provide a crucial resource for uncovering the species phylogenetic history and will help assess the degree of genetic isolation among its populations. A total of 23 contiguous chromosomal pseudomolecules (sex chromosomes included) were assembled from the genome sequence. This chromosome-level assembly encompasses 1.9 Gb, composed of 447 contigs and 141 scaffolds, with contig and scaffold N50 values of 48.7 Mb and 89.1 Mb, respectively. |
| publishDate |
2025 |
| dc.date.none.fl_str_mv |
2025 2026 2026 |
| dc.type.none.fl_str_mv |
info:eu-repo/semantics/article http://purl.org/coar/resource_type/c_6501 Publisher's version info:eu-repo/semantics/publishedVersion |
| format |
article |
| status_str |
publishedVersion |
| dc.identifier.none.fl_str_mv |
http://hdl.handle.net/10261/425405 https://api.elsevier.com/content/abstract/scopus_id/105029461206 |
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http://hdl.handle.net/10261/425405 https://api.elsevier.com/content/abstract/scopus_id/105029461206 |
| dc.language.none.fl_str_mv |
Inglés |
| language_invalid_str_mv |
Inglés |
| dc.relation.none.fl_str_mv |
#PLACEHOLDER_PARENT_METADATA_VALUE# info:eu-repo/grantAgreement/EC/HE/101059492 Open research Europe The underlying dataset has been published as supplementary material of the article in the publisher platform at DOI http://dx.doi.org/10.12688/openreseurope.20937.2 http://dx.doi.org/10.12688/openreseurope.20937.2 Sí |
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info:eu-repo/semantics/openAccess |
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openAccess |
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application/pdf |
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European Commission Taylor & Francis F1000Research |
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European Commission Taylor & Francis F1000Research |
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reponame:DIGITAL.CSIC. Repositorio Institucional del CSIC instname:Consejo Superior de Investigaciones Científicas (CSIC) |
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Consejo Superior de Investigaciones Científicas (CSIC) |
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DIGITAL.CSIC. Repositorio Institucional del CSIC |
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DIGITAL.CSIC. Repositorio Institucional del CSIC |
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15,811543 |